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scnpilot_p_inoc_scaffold_1269_curated_6

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 4046..4606

Top 3 Functional Annotations

Value Algorithm Source
Sigma-24 (FecI-like) n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDZ2_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 186.0
  • Bit_score: 247
  • Evalue 1.10e-62
RNA polymerase {ECO:0000313|EMBL:KHK93420.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.6
  • Coverage: 186.0
  • Bit_score: 271
  • Evalue 1.00e-69
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 51.9
  • Coverage: 181.0
  • Bit_score: 178
  • Evalue 2.00e-42

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Taxonomy

Novosphingobium malaysiense → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
GTGCAGGGGCAGCGCGACACGGGTGAACAGGGCCTGATAGAGGACGTCCGGTCGGGAAGCCGGACAGCATTCGGACGGCTCGTCGAGCCGCACCTGCCGCGGTTGCTCGGTCTCGCCCGGCGCATGCTGGGCTCGAGCGAGGAGGCGGAGGATGCCGTCCAGACGGCTCTCGCTTCGACCTGGATCGCGCGCGCGAAGCTGGACCCTACCCAACCGGTGGCGGCCTATCTCACCACTATAACGCTCAACAAGTGCCGAGATCGGCTGCGGCGGCGCAGGGCGGCCCGTTTCCTGAGCTTCGGCGTCTTCGACGCAGATATGCCGGTTGTTGCCGAGACTCCCGATGCGGAGACCGAGATCGGTGATCGACAAACCCTCGAACGAGTGTCCCGCGCGATCGAGCGCCTGCCCCTGAAGCTGCGCGAGGCGCTGATCCTCGTCACCATCGACGGCCGGAGCCAGCGCGAGGCGGCTGAGCTTCTCGGCGTGACCGAAAAGACGATCGAGACACGCATTTACCGCGCGCGGCAGCGCCTGCGCGAAAAGCTCGATTTTGTTTGA
PROTEIN sequence
Length: 187
VQGQRDTGEQGLIEDVRSGSRTAFGRLVEPHLPRLLGLARRMLGSSEEAEDAVQTALASTWIARAKLDPTQPVAAYLTTITLNKCRDRLRRRRAARFLSFGVFDADMPVVAETPDAETEIGDRQTLERVSRAIERLPLKLREALILVTIDGRSQREAAELLGVTEKTIETRIYRARQRLREKLDFV*