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scnpilot_p_inoc_scaffold_1269_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1269_curated_1
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156..2120)
DNA (1965bp) protein (655aa)
copper-translocating P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-translocating P-type ATPase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IP43_9SPHN
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
scnpilot_p_inoc_scaffold_1269_curated_2
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2151..2435)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035E4A8F
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_1269_curated_3
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2532..3218)
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDZ5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ60436.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3318..3602
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDZ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK93418.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3599..4039
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDZ3_9SPHN
Heavy metal resistance protein {ECO:0000313|EMBL:KHK93419.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4046..4606
DNA (561bp) protein (187aa)
Sigma-24 (FecI-like) n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EDZ2_9SPHN
RNA polymerase {ECO:0000313|EMBL:KHK93420.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_1269_curated_7
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4639..6429
DNA (1791bp) protein (597aa)
Copper-binding protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EF89_9SPHN
Copper-binding protein {ECO:0000313|EMBL:KHK93421.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
copper-binding protein
scnpilot_p_inoc_scaffold_1269_curated_8
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6429..7451
DNA (1023bp) protein (341aa)
Copper resistance protein B n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EF90_9SPHN
Copper resistance protein B {ECO:0000313|EMBL:EHJ60048.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
copper resistance protein B; K07233 copper resistance protein B
scnpilot_p_inoc_scaffold_1269_curated_9
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7785..9044
DNA (1260bp) protein (420aa)
Phage integrase n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CXZ5_9RHOB
Integrase {ECO:0000313|EMBL:KJZ21455.1}; TaxID=379347 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria mobilis.;"
integrase family protein
scnpilot_p_inoc_scaffold_1269_curated_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9187..9807
DNA (621bp) protein (207aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HPU5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGB55893.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_11
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9800..10666
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HSE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL01784.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_12
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11156..11944)
DNA (789bp) protein (263aa)
TonB family protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C050_9SPHN
TonB family protein {ECO:0000313|EMBL:EIZ77137.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
TonB family protein; K03832 periplasmic protein TonB
scnpilot_p_inoc_scaffold_1269_curated_13
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11931..13127)
DNA (1197bp) protein (399aa)
Uncharacterized iron-regulated membrane protein Iron-uptake factor PiuB n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM79_9SPHN
Uncharacterized iron-regulated membrane protein Iron-uptake factor PiuB {ECO:0000313|EMBL:CCW16687.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13138..15504)
DNA (2367bp) protein (789aa)
Ferric siderophore receptor, TonB dependent n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMK1_9SPHN
Ferric siderophore receptor, TonB dependent {ECO:0000313|EMBL:CCW16688.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_1269_curated_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15701..16708)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CTF3_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74216.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
putative transmembrane sensor histidine kinase transcriptional regulator
scnpilot_p_inoc_scaffold_1269_curated_16
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16809..17324)
DNA (516bp) protein (172aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D5I2_SPHYA
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU74217.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
rpoE; putative RNA polymerase ECF sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_1269_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17692..18471)
DNA (780bp) protein (260aa)
biopolymer transporter TonB n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BC8E
Energy transducer TonB {ECO:0000313|EMBL:AJP74300.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB family protein; K03832 periplasmic protein TonB
scnpilot_p_inoc_scaffold_1269_curated_18
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18471..19664)
DNA (1194bp) protein (398aa)
Uncharacterized iron-regulated membrane protein Iron-uptake factor PiuB n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM79_9SPHN
Uncharacterized iron-regulated membrane protein Iron-uptake factor PiuB {ECO:0000313|EMBL:CCW16687.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1269_curated_19
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19673..22114)
DNA (2442bp) protein (814aa)
TonB-dependent siderophore receptor family protein 10 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FD35_9BURK
TonB-dependent siderophore receptor family protein 10 {ECO:0000313|EMBL:EHK63828.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
TonB-dependent siderophore receptor family protein 10; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_1269_curated_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22251..23243)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DGQ1_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFD25918.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
fecR; FecR protein
scnpilot_p_inoc_scaffold_1269_curated_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23373..23804)
DNA (432bp) protein (144aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CWP9_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFD25919.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
rpoE; DNA-directed RNA polymerase sigma-E/Sigma-24/FecI; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Displaying 21 items

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