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scnpilot_p_inoc_scaffold_1269_curated_16

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(16809..17324)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D5I2_SPHYA similarity UNIREF
DB: UNIREF100
  • Identity: 72.9
  • Coverage: 170.0
  • Bit_score: 251
  • Evalue 5.40e-64
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU74217.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.9
  • Coverage: 170.0
  • Bit_score: 251
  • Evalue 7.60e-64
rpoE; putative RNA polymerase ECF sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 167.0
  • Bit_score: 135
  • Evalue 1.40e-29

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGCCGACGAACTCAATCGCCTTGTCGCGTCTGCTTCAGGCGGAACGCAAATCCCTGCTCCGGCAGGTGCGCCGCCTCGTGGGCGCAGAAAGCGCCGAAGACGTGGCGCAAAAGCTGTGGCTCAAGGTTCAGGCGGTGCGGGATGATCCACCGATCCTCAACCAGAGAGCCTATCTACGCCGCCTCGCGCATAACGTTGCGGTCGATCATGTGCAGGCCGACCGGCGGCAGGCGACGGTGGCGGAGCGAGCCGAAGCGCTGCTGTGGGGCGTCGATTACGAACTGGGGCCCGAACGGATCACGGAATCGCGCGAGACGCTGGACCGGATTTACGCAGCGATCGCCGCACTGCCGGAACCAACGCGGACCATCTTGCGGTTGGTTCGCCTGGAAGGCAGGACGCAGCGCGAGACAGCGGAGGAGGTCGGCGTCACCACAACAACCGTCGAAAATCACCTGCGCCGCGCACTCGCCCAGCTCGGCCGTATTCGCGACGGGGATTTGGACAGCGCGTGA
PROTEIN sequence
Length: 172
MPTNSIALSRLLQAERKSLLRQVRRLVGAESAEDVAQKLWLKVQAVRDDPPILNQRAYLRRLAHNVAVDHVQADRRQATVAERAEALLWGVDYELGPERITESRETLDRIYAAIAALPEPTRTILRLVRLEGRTQRETAEEVGVTTTTVENHLRRALAQLGRIRDGDLDSA*