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scnpilot_p_inoc_scaffold_1269_curated_21

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(23373..23804)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CWP9_SPHYA similarity UNIREF
DB: UNIREF100
  • Identity: 49.6
  • Coverage: 139.0
  • Bit_score: 127
  • Evalue 1.30e-26
Uncharacterized protein {ECO:0000313|EMBL:KFD25919.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.6
  • Coverage: 139.0
  • Bit_score: 127
  • Evalue 1.40e-26
rpoE; DNA-directed RNA polymerase sigma-E/Sigma-24/FecI; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 39.4
  • Coverage: 137.0
  • Bit_score: 91
  • Evalue 3.20e-16

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 432
GACCCGGTCCTCGCCGAAGATATTGTGCACGATGCCTGGATAAAAACGTGCGAACACGCTTCGCTCAACGAGGTCCATGACTTTGGCGCATACCTTCGCCTTGTGGTCCGTAATCTCGCTATAGATGCAATCCGCAGGCGCCATCGTAGCGCCATTGTCGCAAAATATGGACTAGACGGAAACGCCGAAATGACGGTCGATCCTTCCCCTCTGGCCGATGCCACATTGATCGGAAGGGAAGAACTCGCGCGCTTTCAACAGGCGTTGGAGCTCTTGCCCGAACGGCAACGGATCGCAGTGGAGATGCACAGACTGGGGAATTACAAGCTTCGCGAAATCGCCGATCGTTTCGGCGTATCGGTGGCCTACGCTCAGGAATTGGTTGCCAAGGGCATGGCGCAATGCGCTCGCTACGTGAAGGACGGACAATGA
PROTEIN sequence
Length: 144
DPVLAEDIVHDAWIKTCEHASLNEVHDFGAYLRLVVRNLAIDAIRRRHRSAIVAKYGLDGNAEMTVDPSPLADATLIGREELARFQQALELLPERQRIAVEMHRLGNYKLREIADRFGVSVAYAQELVAKGMAQCARYVKDGQ*