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scnpilot_p_inoc_scaffold_1043_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1043_curated_1
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1001
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI000381429E
phage integrase family protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
scnpilot_p_inoc_scaffold_1043_curated_2
unknown

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1005..1595
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI000360CF88
scnpilot_p_inoc_scaffold_1043_curated_3
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1579..2994
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI00037B8811
site-specific recombinase, phage integrase family
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
scnpilot_p_inoc_scaffold_1043_curated_4
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3398..4546
DNA (1149bp) protein (383aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
DNA-cytosine methyltransferase n=1 Tax=Methylocystis rosea RepID=UPI000373393A
scnpilot_p_inoc_scaffold_1043_curated_5
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4543..5403
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB2388 RepID=K8G7X7_9XANT
Uncharacterized protein {ECO:0000313|EMBL:EKQ63576.1}; TaxID=1127439 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. malvacearum str. GSPB2388.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1043_curated_6
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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5529..6380
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00036FCF90
Uncharacterized protein {ECO:0000313|EMBL:ETK34541.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
scnpilot_p_inoc_scaffold_1043_curated_7
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6377..7702
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI000374583F
Uncharacterized protein {ECO:0000313|EMBL:ETK34540.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
putative transcriptional regulator
scnpilot_p_inoc_scaffold_1043_curated_8
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7702..9606
DNA (1905bp) protein (635aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI000377DF36
Uncharacterized protein {ECO:0000313|EMBL:GAM50197.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
SNF2-related protein
scnpilot_p_inoc_scaffold_1043_curated_9
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9587..10507
DNA (921bp) protein (307aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM50196.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
scnpilot_p_inoc_scaffold_1043_curated_10
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10812..11084
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:AJC44785.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
scnpilot_p_inoc_scaffold_1043_curated_11
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11145..14150
DNA (3006bp) protein (1002aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3FJW8_STEMA
DEAD/DEAH box helicase family protein {ECO:0000313|EMBL:KGC03710.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
DEAD/DEAH box helicase
scnpilot_p_inoc_scaffold_1043_curated_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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14168..14866
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QCP5_SULNB
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_scaffold_1043_curated_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15115..18891
DNA (3777bp) protein (1259aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP48077.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
Putative uncharacterized protein id=3484559 bin=GWC2_Geobacteraceae_55_20 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
scnpilot_p_inoc_scaffold_1043_curated_14
unknown

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19793..20050
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1043_curated_15
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20019..20909)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XAS4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFF76086.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1043_curated_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21980..22876)
DNA (897bp) protein (299aa)
Integrase catalytic region n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZR3_THIK1
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ADG30479.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
scnpilot_p_inoc_scaffold_1043_curated_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22873..23169)
DNA (297bp) protein (99aa)
Transposase IS3/IS911 family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYS8_THIK1
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ADG32255.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
scnpilot_p_inoc_scaffold_1043_curated_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23283..23468)
DNA (186bp) protein (62aa)
Putative DNA-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNH5_9GAMM
Putative DNA-binding protein {ECO:0000313|EMBL:EIL88766.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
scnpilot_p_inoc_scaffold_1043_curated_19
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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24587..25177
DNA (591bp) protein (197aa)
Competence protein ComM n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SWU0_META2
Magnesium chelatase, competence related protein (ComM) {ECO:0000313|EMBL:CDH43042.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
comM; Competence protein ComM; K07391 magnesium chelatase family protein
scnpilot_p_inoc_scaffold_1043_curated_20
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25266..26336
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037716CF
Uncharacterized protein {ECO:0000313|EMBL:KFN45990.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
scnpilot_p_inoc_scaffold_1043_curated_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26362..27537)
DNA (1176bp) protein (392aa)
SagB-type dehydrogenase domain n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPQ0_PSEUU
Dehydrogenase {ECO:0000313|EMBL:GAN45067.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SagB-type dehydrogenase domain
scnpilot_p_inoc_scaffold_1043_curated_22
unknown

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27701..27985
DNA (285bp) protein (95aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1043_curated_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27973..30645)
DNA (2673bp) protein (891aa)
Tetratricopeptide repeat family n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CL50_XANCA
Adenylate cyclase {ECO:0000313|EMBL:GAN45070.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1043_curated_24
unknown

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30882..31160
DNA (279bp) protein (93aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1043_curated_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(31161..32879)
DNA (1719bp) protein (573aa)
adenylate cyclase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3B305
Adenylate cyclase {ECO:0000313|EMBL:GAN45070.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
Displaying 25 items

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