ggKbase home page

scnpilot_p_inoc_scaffold_1898_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1898_curated_1

Not on your lists

3..1169
DNA (1167bp) protein (389aa)
Elongation factor Tu n=2 Tax=Bacteria RepID=B8PZT8_9BACT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=504464 species="Bacteria; candidate division WS6; environmental samples.;" source="uncultured bacterium pTW2.;"
translation elongation factor TU; K02358 elongation factor Tu
scnpilot_p_inoc_scaffold_1898_curated_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1403..1792
DNA (390bp) protein (130aa)
Protein translocase subunit SecE n=2 Tax=Rhodanobacter RepID=I4WGB0_9GAMM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
preprotein translocase, SecE subunit
scnpilot_p_inoc_scaffold_1898_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1800..2360
DNA (561bp) protein (187aa)
transcription antitermination protein nusG
Transcription antitermination protein nusG id=2468504 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_1898_curated_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2518..2946
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVI1_PSEUU
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_p_inoc_scaffold_1898_curated_5

Not on your lists


2950..3651
DNA (702bp) protein (234aa)
50s ribosomal protein l1 n=1 Tax=mine drainage metagenome RepID=T0ZAT5_9ZZZZ
50s ribosomal protein l1 {ECO:0000313|EMBL:EQD42178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L1
scnpilot_p_inoc_scaffold_1898_curated_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3986..4510
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036394D4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
scnpilot_p_inoc_scaffold_1898_curated_7
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4561..4938
DNA (378bp) protein (126aa)
50S ribosomal protein L7 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6CC02
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
scnpilot_p_inoc_scaffold_1898_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5159..9319
DNA (4161bp) protein (1387aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Rudaea cellulosilytica RepID=UPI000370045F
scnpilot_p_inoc_scaffold_1898_curated_9
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9346..13542
DNA (4197bp) protein (1399aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Rudaea cellulosilytica RepID=UPI0003718CD2
scnpilot_p_inoc_scaffold_1898_curated_10
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13734..14108
DNA (375bp) protein (125aa)
30S ribosomal protein S12 id=2468511 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
scnpilot_p_inoc_scaffold_1898_curated_11
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14135..14602
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=3 Tax=Xanthomonas oryzae pv. oryzae RepID=RS7_XANOM
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=360094 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain PXO99A).;"
scnpilot_p_inoc_scaffold_1898_curated_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14621..16711
DNA (2091bp) protein (697aa)
Translation elongation factor 2 (EF-2/EF-G) n=5 Tax=mine drainage metagenome RepID=T1CGF9_9ZZZZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
fusA; elongation factor g protein; K02355 elongation factor G
scnpilot_p_inoc_scaffold_1898_curated_13

Not on your lists


16801..16911
DNA (111bp) protein (37aa)
Translation elongation factor Tu (Fragment) n=1 Tax=mine drainage metagenome RepID=T1C3N3_9ZZZZ
Translation elongation factor Tu {ECO:0000313|EMBL:EQD60710.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation elongation factor Tu
Displaying 13 items

View Taxonomy