ggKbase home page

scnpilot_p_inoc_scaffold_57_curated

Search features with annotation key words

Displaying items 1-30 of 254 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_57_curated_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(297..3206)
DNA (2910bp) protein (970aa)
formate dehydrogenase subunit alpha (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] rbh
formate dehydrogenase subunit alpha n=1 Tax=Rudaea cellulosilytica RepID=UPI00037180DF
Formate dehydrogenase {ECO:0000313|EMBL:KGI79013.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_p_inoc_scaffold_57_curated_2
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3249..4805)
DNA (1557bp) protein (519aa)
NAD-dependent formate dehydrogenase beta subunit {ECO:0000313|EMBL:EIZ02777.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EIZ02777.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
NAD-dependent formate dehydrogenase beta subunit n=1 Tax=Ralstonia sp. PBA RepID=I9W2Y3_9RALS
NADH dehydrogenase
scnpilot_p_inoc_scaffold_57_curated_3
Halomonas elongata, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4802..5320)
DNA (519bp) protein (173aa)
fdsG; formate dehydrogenase subunit gamma (EC:1.2.1.2); K00127 formate dehydrogenase, gamma subunit
Formate dehydrogenase subunit gamma {ECO:0000313|EMBL:CBV41783.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CBV41783.1};; TaxID=768066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB; 2198 / 1H9).;"
formate dehydrogenase subunit gamma n=1 Tax=Methylococcus capsulatus RepID=UPI000307AA1C
scnpilot_p_inoc_scaffold_57_curated_4
unknown

Not on your lists

comp(5389..5847)
DNA (459bp) protein (153aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_57_curated_5
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5995..6978)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C911A
putative esterase of the alpha-beta hydrolase superfamily; K07001 NTE family protein
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:AFC87424.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_p_inoc_scaffold_57_curated_6
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6975..7955)
DNA (981bp) protein (327aa)
transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI00037A76AC
Transcriptional regulator {ECO:0000313|EMBL:KJV36561.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative transcriptional regulator
scnpilot_p_inoc_scaffold_57_curated_7
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8181..11018
DNA (2838bp) protein (946aa)
DMSO reductase subunit A (EC:1.2.7.-); K00183 molybdopterin oxidoreductase, molybdopterin binding subunit [EC:1.2.7.-]
formate dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B33440
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_57_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11015..12781
DNA (1767bp) protein (589aa)
Sodium (Na+) symporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUH6_9GAMM
Sodium (Na+) symporter {ECO:0000313|EMBL:EIL90867.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
sodium (Na+) symporter
scnpilot_p_inoc_scaffold_57_curated_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12778..13653
DNA (876bp) protein (292aa)
DMSO reductase subunit B (EC:1.2.4.2)
ferredoxin n=1 Tax=Martelella mediterranea RepID=UPI00035D21B5
Ferredoxin {ECO:0000313|EMBL:GAN44947.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_p_inoc_scaffold_57_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13665..14720
DNA (1056bp) protein (352aa)
DMSO reductase anchor subunit (DmsC) n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Y5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31199.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DMSO reductase chain C
scnpilot_p_inoc_scaffold_57_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14875..15642
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003610546
Putative salt-induced outer membrane protein {ECO:0000313|EMBL:EIL97048.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative salt-induced outer membrane protein
scnpilot_p_inoc_scaffold_57_curated_12
unknown

Not on your lists

comp(15555..15755)
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_57_curated_13
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15777..16703)
DNA (927bp) protein (309aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hydroxymethylbilane synthase (EC:2.5.1.61)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003752DB7
scnpilot_p_inoc_scaffold_57_curated_14
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16700..17434)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372FB21
Uncharacterized protein {ECO:0000313|EMBL:KFL37533.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
putative two-component system response regulator; K08083 two-component system, LytT family, response regulator AlgR
scnpilot_p_inoc_scaffold_57_curated_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17431..18468)
DNA (1038bp) protein (346aa)
autolysin sensor kinase (EC:2.7.3.-); K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365C61C
Histidine kinase {ECO:0000313|EMBL:GAN44951.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_p_inoc_scaffold_57_curated_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18506..19180)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A84CA
putative esterase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_57_curated_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19311..21695
DNA (2385bp) protein (795aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000375F13A
Peptidase S9 {ECO:0000313|EMBL:GAN44953.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_p_inoc_scaffold_57_curated_18
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

comp(22085..22843)
DNA (759bp) protein (253aa)
Aureolysin n=1 Tax=Glaciecola arctica BSs20135 RepID=K6Z0X8_9ALTE
Tax=CG_Bacteroid_02
scnpilot_p_inoc_scaffold_57_curated_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23220..23678
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EAA6D
membrane protease subunit, stomatin/prohibitin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_57_curated_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23749..24411
DNA (663bp) protein (221aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUG2_9GAMM
scnpilot_p_inoc_scaffold_57_curated_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24408..25199
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003790276
Chromosome partitioning protein {ECO:0000313|EMBL:KGI76699.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ATPase involved in chromosome partitioning
scnpilot_p_inoc_scaffold_57_curated_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25211..26086
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372ECF4
Chromosome partitioning protein ParB {ECO:0000313|EMBL:GAN45557.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ParB-like partition protein
scnpilot_p_inoc_scaffold_57_curated_23
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26179..26895
DNA (717bp) protein (239aa)
DPM1; dolichol-phosphate mannosyltransferase (EC:2.4.1.83); K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
dolichol-phosphate mannosyltransferase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FAFCD
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:AJC46436.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
scnpilot_p_inoc_scaffold_57_curated_24

Not on your lists


27113..27349
DNA (237bp) protein (79aa)
50S ribosomal protein L28 n=2 Tax=mine drainage metagenome RepID=T1BC24_9ZZZZ
50S ribosomal protein L28 {ECO:0000313|EMBL:EQD67422.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
scnpilot_p_inoc_scaffold_57_curated_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27363..27527
DNA (165bp) protein (55aa)
50S ribosomal protein L33 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037F7996
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
scnpilot_p_inoc_scaffold_57_curated_26
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27833..28768
DNA (936bp) protein (312aa)
Sulfate-transporting ATPase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E1H4_9GAMM
ABC transporter {ECO:0000313|EMBL:KGI79065.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC transporter related; K01990 ABC-2 type transport system ATP-binding protein
scnpilot_p_inoc_scaffold_57_curated_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28765..29523
DNA (759bp) protein (253aa)
ABC transporter permease n=1 Tax=Dyella ginsengisoli RepID=UPI000348AEE3
ABC transporter permease {ECO:0000313|EMBL:EIL97223.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_57_curated_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29527..30876
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJM6_9GAMM
ABC transporter {ECO:0000313|EMBL:AHX15036.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ABC-type uncharacterized transporter
scnpilot_p_inoc_scaffold_57_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30873..31667
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JP24_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45110.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_57_curated_30
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31680..32492
DNA (813bp) protein (271aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DF6E4
Displaying items 1-30 of 254 in total

View Taxonomy