ggKbase home page

scnpilot_p_inoc_scaffold_205_curated

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_205_curated_1
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1530
DNA (1530bp) protein (510aa)
hypothetical protein; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00035E6CEC
Type I site-specific deoxyribonuclease {ECO:0000313|EMBL:KEZ78645.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
scnpilot_p_inoc_scaffold_205_curated_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1608..1877
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4J6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94387.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_p_inoc_scaffold_205_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1874..2173
DNA (300bp) protein (100aa)
Plasmid stabilization system n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4J5_9GAMM
Plasmid stabilization system {ECO:0000313|EMBL:EIL94386.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
plasmid stabilization system
scnpilot_p_inoc_scaffold_205_curated_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2115..3848
DNA (1734bp) protein (578aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
N-6 DNA methylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4J4_9GAMM
N-6 DNA methylase {ECO:0000313|EMBL:EIL94385.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_p_inoc_scaffold_205_curated_5
Enterobacter sp. 35669, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3841..5094
DNA (1254bp) protein (418aa)
Restriction modification system DNA specificity domain; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Type I restriction/modification specificity protein n=3 Tax=Neisseria meningitidis RepID=J8W0X6_NEIME
Uncharacterized protein {ECO:0000313|EMBL:KJN35766.1}; TaxID=1619244 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35669.;"
scnpilot_p_inoc_scaffold_205_curated_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5381..5836
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EA327
Uncharacterized protein {ECO:0000313|EMBL:KGI76940.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_p_inoc_scaffold_205_curated_7
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6122..7447
DNA (1326bp) protein (442aa)
Ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84]
Ste24 endopeptidase {ECO:0000313|EMBL:ACY18025.1}; EC=3.4.24.84 {ECO:0000313|EMBL:ACY18025.1};; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Ste24 endopeptidase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZP6_HALO1
scnpilot_p_inoc_scaffold_205_curated_8
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7780..8550
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B150F
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_p_inoc_scaffold_205_curated_9
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(8561..10978)
DNA (2418bp) protein (806aa)
TPR repeat-containing serine/threonin protein kinase; K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1]
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037531FC
Tax=RBG_16_Aminicenantes_63_16_curated
scnpilot_p_inoc_scaffold_205_curated_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11098..11520)
DNA (423bp) protein (141aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TTX3_TISMK
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AFK56211.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_205_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11560..12192)
DNA (633bp) protein (211aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS29_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EIL90020.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutathione S-transferase
scnpilot_p_inoc_scaffold_205_curated_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12289..14397)
DNA (2109bp) protein (703aa)
Amidohydrolase family protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FRM6_STIAD
amidohydrolase family protein
Amidohydrolase family protein {ECO:0000313|EMBL:ADO75803.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
scnpilot_p_inoc_scaffold_205_curated_13
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14470..16629
DNA (2160bp) protein (720aa)
Peptidyl-dipeptidase {ECO:0000313|EMBL:EKU26702.1}; EC=3.4.15.5 {ECO:0000313|EMBL:EKU26702.1};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
dipeptidyl carboxypeptidase II n=1 Tax=Xanthomonas sacchari RepID=UPI00026300E4
peptidyl-dipeptidase
scnpilot_p_inoc_scaffold_205_curated_14
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16866..17570)
DNA (705bp) protein (235aa)
DNA ligase III-like protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWW4_9BURK
DNA ligase III-like protein {ECO:0000313|EMBL:EHL23020.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
DNA ligase III-like protein
scnpilot_p_inoc_scaffold_205_curated_15
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17567..18097)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BVJ6_9GAMM
Plasmid pAcX50e, complete sequence {ECO:0000313|EMBL:AJE23665.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
hypothetical protein
scnpilot_p_inoc_scaffold_205_curated_16
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18090..19487)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BVJ5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR20260.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
hypothetical protein
scnpilot_p_inoc_scaffold_205_curated_17
unknown

Not on your lists

20024..21823
DNA (1800bp) protein (600aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_205_curated_18
unknown

Not on your lists

21898..23673
DNA (1776bp) protein (592aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_205_curated_19
unknown

Not on your lists

23835..25673
DNA (1839bp) protein (613aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_205_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26055..28778)
DNA (2724bp) protein (908aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Serine/threonine protein kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z0_9GAMM
Serine/threonine protein kinase {ECO:0000313|EMBL:EIL95231.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_p_inoc_scaffold_205_curated_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29044..29577)
DNA (534bp) protein (178aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P44_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_205_curated_22
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30440..31915
DNA (1476bp) protein (492aa)
Glycosyltransferase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URS4_PSEUP
Glycosyltransferase {ECO:0000313|EMBL:KGM53363.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
glycosyltransferase
scnpilot_p_inoc_scaffold_205_curated_23
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31983..33623
DNA (1641bp) protein (547aa)
glutamate synthase (EC:1.4.1.13)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E231F
Uncharacterized protein {ECO:0000313|EMBL:KFN42910.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
scnpilot_p_inoc_scaffold_205_curated_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33784..35496
DNA (1713bp) protein (571aa)
Alkaline phosphatase (EC:3.1.3.1)
Alkaline phosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQT6_9GAMM
Alkaline phosphatase {ECO:0000313|EMBL:EIL89577.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_p_inoc_scaffold_205_curated_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35685..37043
DNA (1359bp) protein (453aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
butyryl-CoA:acetate CoA transferase (EC:2.8.3.8); K01027 3-oxoacid CoA-transferase [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Dyella japonica RepID=UPI0002FD41AD
scnpilot_p_inoc_scaffold_205_curated_26
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37169..37633)
DNA (465bp) protein (155aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
tRNA/rRNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036B0714
scnpilot_p_inoc_scaffold_205_curated_27

Not on your lists

37763..38299
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QF90_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI05877.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conserved hypothetical protein TIGR00650
scnpilot_p_inoc_scaffold_205_curated_28
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38307..39164)
DNA (858bp) protein (286aa)
Putative esterase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZZ0_CORCM
besA1; putative esterase
Putative esterase {ECO:0000313|EMBL:AFE08190.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
scnpilot_p_inoc_scaffold_205_curated_29
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

39365..41407
DNA (2043bp) protein (681aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0N3_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL98820.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
scnpilot_p_inoc_scaffold_205_curated_30
unknown

Not on your lists

comp(41529..41885)
DNA (357bp) protein (119aa)

This feature has no annotations

Displaying items 1-30 of 126 in total

View Taxonomy