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scnpilot_p_inoc_scaffold_1366_curated

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1366_curated_1
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(244..1455)
DNA (1212bp) protein (404aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPM0_9GAMM
scnpilot_p_inoc_scaffold_1366_curated_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1633..3078
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035FF8C9
Peptidase M23 {ECO:0000313|EMBL:GAN45193.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
metalloendopeptidase-like membrane protein
scnpilot_p_inoc_scaffold_1366_curated_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3088..4248
DNA (1161bp) protein (387aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGV8_9GAMM
molecular chaperone
scnpilot_p_inoc_scaffold_1366_curated_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4258..4542)
DNA (285bp) protein (95aa)
Uncharacterized protein {ECO:0000313|EMBL:GAN45191.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_p_inoc_scaffold_1366_curated_5
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4613..5926)
DNA (1314bp) protein (438aa)
Arabinose efflux permease family protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KZ64_FRAAD
arabinose efflux permease family protein; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
Arabinose efflux permease family protein {ECO:0000313|EMBL:AFC84555.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_p_inoc_scaffold_1366_curated_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5923..6708)
DNA (786bp) protein (262aa)
exodeoxyribonuclease III Xth (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III {ECO:0000313|EMBL:EZP44212.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EZP44212.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Exodeoxyribonuclease III Xth n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K5G9_STEMA
scnpilot_p_inoc_scaffold_1366_curated_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6783..7424
DNA (642bp) protein (214aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
orotate phosphoribosyltransferase n=1 Tax=Dyella japonica RepID=UPI00030B69C2
orotate phosphoribosyltransferase
scnpilot_p_inoc_scaffold_1366_curated_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7488..8123
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003470B0F
ABC transporter ATPase {ECO:0000313|EMBL:GAN45187.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1366_curated_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8219..10642)
DNA (2424bp) protein (808aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000365F896
Phosphoglucomutase {ECO:0000313|EMBL:GAN45186.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
phosphomannomutase
scnpilot_p_inoc_scaffold_1366_curated_10
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10732..11190)
DNA (459bp) protein (153aa)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1347420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii Hm21.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Aeromonas veronii AER397 RepID=K1IRU0_9GAMM
scnpilot_p_inoc_scaffold_1366_curated_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11187..12440)
DNA (1254bp) protein (418aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
phosphopantothenoylcysteine decarboxylase n=1 Tax=Dyella ginsengisoli RepID=UPI000347650B
Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:KGI79222.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_p_inoc_scaffold_1366_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12490..13194
DNA (705bp) protein (235aa)
DNA repair protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW7_9GAMM
DNA repair protein
DNA repair protein {ECO:0000313|EMBL:AGG90906.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_1366_curated_13
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13267..14331
DNA (1065bp) protein (355aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL36106.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
id=2536421 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_p_inoc_scaffold_1366_curated_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14727..16409
DNA (1683bp) protein (561aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CCA2F
scnpilot_p_inoc_scaffold_1366_curated_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16480..17079
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D0697
Sporulation protein {ECO:0000313|EMBL:GAN45181.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
cell division protein
scnpilot_p_inoc_scaffold_1366_curated_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17170..17640)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SMW6_STRM5
Uncharacterized protein {ECO:0000313|EMBL:KGI78910.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1366_curated_17
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(17779..18207)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NSX0_GRAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU36313.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
scnpilot_p_inoc_scaffold_1366_curated_18
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18204..18701)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACW8_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:KJV34650.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1366_curated_19
unknown

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comp(18728..18991)
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1366_curated_20

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comp(19486..20040)
DNA (555bp) protein (185aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BIQ1_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48659.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1366_curated_21
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20170..20943)
DNA (774bp) protein (258aa)
Putative uncharacterized protein id=2988834 bin=GWF1_Xanthomonadales_69_6 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein; K07090
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_p_inoc_scaffold_1366_curated_22
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21026..21385)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ECV0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGO98503.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
hypothetical protein
Displaying 22 items

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