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scnpilot_p_inoc_scaffold_999_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_999_curated_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(859..3729)
DNA (2871bp) protein (957aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
gcvP; glycine dehydrogenase (EC:1.4.4.2); K00281 glycine dehydrogenase [EC:1.4.4.2]
glycine dehydrogenase n=1 Tax=Dyella japonica RepID=UPI000317DC63
scnpilot_p_inoc_scaffold_999_curated_2
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4134..5357
DNA (1224bp) protein (408aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL36984.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Diguanylate cyclase id=2739873 bin=GWF1_Xanthomonadales_69_6 species=Pseudomonas pseudoalcaligenes genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
scnpilot_p_inoc_scaffold_999_curated_3
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5354..6064
DNA (711bp) protein (237aa)
haloacid dehalogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B352FB
Haloacid dehalogenase {ECO:0000313|EMBL:KGM56382.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
haloacid dehalogenase; K07025 putative hydrolase of the HAD superfamily
scnpilot_p_inoc_scaffold_999_curated_4
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6113..6865)
DNA (753bp) protein (251aa)
Transcriptional regulator, XRE family id=2430531 bin=GWF1_Xanthomonadales_69_6 species=Phenylobacterium zucineum genus=Phenylobacterium taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
transcriptional regulator, XRE family
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_p_inoc_scaffold_999_curated_5
unknown

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comp(7373..7672)
DNA (300bp) protein (100aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_999_curated_6
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8216..9466
DNA (1251bp) protein (417aa)
RND family efflux transporter MFP subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTT3_9GAMM
hypothetical protein; K02005 HlyD family secretion protein rbh
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_999_curated_7
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9547..10299
DNA (753bp) protein (251aa)
ABC transporter-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVD2_9GAMM
antimicrobial peptide ABC transporter ATPase
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_999_curated_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10361..12772
DNA (2412bp) protein (804aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003676465
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_999_curated_9
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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12784..15177
DNA (2394bp) protein (798aa)
Putative permease n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DBM7_MYXXD
permease
Putative permease {ECO:0000313|EMBL:ABF85947.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
scnpilot_p_inoc_scaffold_999_curated_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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15309..17747
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U4C3_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
scnpilot_p_inoc_scaffold_999_curated_11
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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17802..20177
DNA (2376bp) protein (792aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PE9_SOLUE
Permease {ECO:0000313|EMBL:AKF81687.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
scnpilot_p_inoc_scaffold_999_curated_12
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20259..20930
DNA (672bp) protein (224aa)
ABC transporter, ATP-binding protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SME1_9DELT
ABC transporter ATP-binding protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_999_curated_13
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20967..21212
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VS40_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ20365.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
scnpilot_p_inoc_scaffold_999_curated_14
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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21209..21634
DNA (426bp) protein (142aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
Ribonuclease VapC n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89SG6_BRADU
plasmid stability protein; K07062
scnpilot_p_inoc_scaffold_999_curated_15
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21625..23019
DNA (1395bp) protein (465aa)
chemotaxis protein CheY n=1 Tax=Dyella ginsengisoli RepID=UPI00034BD6B9
two component, sigma54 specific, Fis family transcriptional regulator
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_999_curated_16
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23074..24414
DNA (1341bp) protein (447aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTU4_9GAMM
multi-sensor signal transduction histidine kinase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_999_curated_17
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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24474..25118
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E4989D
hypothetical protein; K08984 putative membrane protein
Uncharacterized conserved protein UCP020606 {ECO:0000313|EMBL:ADV27744.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_p_inoc_scaffold_999_curated_18
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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25211..27331
DNA (2121bp) protein (707aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362AC60
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AFD07462.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_p_inoc_scaffold_999_curated_19
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(27538..27885)
DNA (348bp) protein (116aa)
Transport-associated n=1 Tax=Burkholderia ambifaria (strain MC40-6) RepID=B1YZB4_BURA4
Transporter {ECO:0000313|EMBL:KDV22650.1}; TaxID=1395570 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia JBK9.;"
transport-associated; K04065 hyperosmotically inducible periplasmic protein
scnpilot_p_inoc_scaffold_999_curated_20
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28068..28628)
DNA (561bp) protein (187aa)
Putative uncharacterized protein id=3023000 bin=GWF1_Xanthomonadales_69_6 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KFL37455.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
putative N-acetyltransferase
scnpilot_p_inoc_scaffold_999_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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29123..30832
DNA (1710bp) protein (570aa)
Metal-dependent amidohydrolase with the TIM-barrel fold protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVC1_9GAMM
putative TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AGG88659.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 21 items

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