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scnpilot_p_inoc_scaffold_1254_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1254_curated_1
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81..3398
DNA (3318bp) protein (1106aa)
Putative helicase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PI92_9BURK
Putative helicase {ECO:0000313|EMBL:ELX11327.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
viral RNA helicase rbh
scnpilot_p_inoc_scaffold_1254_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3399..5654
DNA (2256bp) protein (752aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
UvrD/REP helicase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2I9_9GAMM
putative DNA helicase
scnpilot_p_inoc_scaffold_1254_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5710..6351)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFA6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88712.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_1254_curated_4
unknown

Not on your lists

6457..7026
DNA (570bp) protein (190aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1254_curated_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7203..7610
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031CD93F
Uncharacterized protein {ECO:0000313|EMBL:EMI50547.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1254_curated_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7664..9586)
DNA (1923bp) protein (641aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7L8_9GAMM
scnpilot_p_inoc_scaffold_1254_curated_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9715..11268
DNA (1554bp) protein (518aa)
nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C7537
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:KGI77672.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative amidohydrolase
scnpilot_p_inoc_scaffold_1254_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11369..12091)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWS5_9GAMM
Ion channel
Ion channel {ECO:0000313|EMBL:AGG89533.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_1254_curated_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12138..12731)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346AFA7
Restriction endonuclease {ECO:0000313|EMBL:EIM00747.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
restriction endonuclease
scnpilot_p_inoc_scaffold_1254_curated_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13069..15975)
DNA (2907bp) protein (969aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM58_9GAMM
scnpilot_p_inoc_scaffold_1254_curated_11
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15972..16970)
DNA (999bp) protein (333aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
ribF; riboflavin biosynthesis protein (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036BB87F
scnpilot_p_inoc_scaffold_1254_curated_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17097..18689)
DNA (1593bp) protein (531aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI00031F4362
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
integral membrane protein MviN
scnpilot_p_inoc_scaffold_1254_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18785..19048
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR0_9GAMM
SSU ribosomal protein S20P
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_1254_curated_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19152..20204)
DNA (1053bp) protein (351aa)
GTPase CgtA n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B6458
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Obg family GTPase CgtA; K03979 GTP-binding protein
scnpilot_p_inoc_scaffold_1254_curated_15
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20391..20657)
DNA (267bp) protein (89aa)
50S ribosomal protein L27 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAZ8_9GAMM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
ribosomal protein L27
scnpilot_p_inoc_scaffold_1254_curated_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20661..21002)
DNA (342bp) protein (114aa)
50S ribosomal protein L21 n=1 Tax=Rudaea cellulosilytica RepID=UPI0003722823
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ribosomal protein L21
scnpilot_p_inoc_scaffold_1254_curated_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21209..22060
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E4660
Magnesium transporter {ECO:0000313|EMBL:GAN45929.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative Mg2+ and Co2+ transporter CorC; K06189 magnesium and cobalt transporter
scnpilot_p_inoc_scaffold_1254_curated_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22057..23298
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364533F
Uncharacterized protein {ECO:0000313|EMBL:EIL92919.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1254_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23311..23973
DNA (663bp) protein (221aa)
DSBA oxidoreductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTC5_9GAMM
DSBA oxidoreductase {ECO:0000313|EMBL:EIM02717.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DSBA oxidoreductase
scnpilot_p_inoc_scaffold_1254_curated_20
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(24178..25674)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003670043
SMP-30/gluconolaconase/LRE domain-containing protein
Tax=CG_Deferri_01
scnpilot_p_inoc_scaffold_1254_curated_21
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25757..26296
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374746F
DNA mismatch repair protein MutT {ECO:0000313|EMBL:AIF49158.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
NTP pyrophosphohydrolase
scnpilot_p_inoc_scaffold_1254_curated_22
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26351..26746)
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KJV36270.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Uncharacterized protein id=2647744 bin=GWF1_Xanthomonadales_69_6 species=Simiduia agarivorans genus=Simiduia taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein; K07136
scnpilot_p_inoc_scaffold_1254_curated_23
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26756..27457)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CCB67
Uncharacterized protein {ECO:0000313|EMBL:KJV36269.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Protein of unknown function (DUF1625)
scnpilot_p_inoc_scaffold_1254_curated_24
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27490..27981)
DNA (492bp) protein (164aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN50514.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Putative uncharacterized protein id=2647649 bin=GWF1_Xanthomonadales_69_6 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
scnpilot_p_inoc_scaffold_1254_curated_25
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28027..28896)
DNA (870bp) protein (290aa)
Metallo-beta-lactamase {ECO:0000313|EMBL:KFN47797.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Beta-lactamase domain protein id=2647648 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
beta-lactamase
scnpilot_p_inoc_scaffold_1254_curated_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28901..30610)
DNA (1710bp) protein (570aa)
gamma-glutamyltransferase 1 (EC:2.3.2.2)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000366707A
Gamma-glutamyltransferase {ECO:0000313|EMBL:AKC87681.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_p_inoc_scaffold_1254_curated_27
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30607..30864)
DNA (258bp) protein (86aa)
4Fe-4S ferredoxin, iron sulfur binding protein n=1 Tax=Oleispira antarctica RB-8 RepID=R4YVD7_OLEAN
4Fe-4S ferredoxin, iron sulfur binding protein {ECO:0000313|EMBL:CCK78019.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
scnpilot_p_inoc_scaffold_1254_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30908..31417)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQR0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90102.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_1254_curated_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31444..31944)
DNA (501bp) protein (167aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000369547B
scnpilot_p_inoc_scaffold_1254_curated_30
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31976..32572)
DNA (597bp) protein (199aa)
Ribosomal RNA small subunit methyltransferase D {ECO:0000256|PIRNR:PIRNR004553}; EC=2.1.1.171 {ECO:0000256|PIRNR:PIRNR004553};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
RsmD family RNA methyltransferase; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
RNA methyltransferase, RsmD family n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L2C4_FRAAD
Displaying items 1-30 of 34 in total

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