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scnpilot_p_inoc_scaffold_430_curated

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_430_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(63..1472)
DNA (1410bp) protein (470aa)
type III restriction enzyme, res subunit; K01156 type III restriction enzyme [EC:3.1.21.5]
Type III restriction enzyme, res subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2I2_9GAMM
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EIL93673.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_p_inoc_scaffold_430_curated_2
unknown

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1680..3644
DNA (1965bp) protein (655aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_430_curated_3
unknown

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3941..4204
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_430_curated_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4218..5048)
DNA (831bp) protein (277aa)
protein-(glutamine-N5) methyltransferase, release factor-specific; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxantho
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365FBF1
scnpilot_p_inoc_scaffold_430_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5048..9166)
DNA (4119bp) protein (1373aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F3DB5
Uncharacterized protein {ECO:0000313|EMBL:AGG90305.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein
scnpilot_p_inoc_scaffold_430_curated_6
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9251..9802)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F7C7F
Uncharacterized protein {ECO:0000313|EMBL:KFL36748.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
scnpilot_p_inoc_scaffold_430_curated_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10159..10746)
DNA (588bp) protein (196aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
alkyl hydroperoxide reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5579A
alkyl hydroperoxide reductase; K04756 alkyl hydroperoxide reductase subunit D
scnpilot_p_inoc_scaffold_430_curated_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11019..11561)
DNA (543bp) protein (181aa)
hypothetical protein; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
alkyl hydroperoxide reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3EB49
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KGI77138.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_p_inoc_scaffold_430_curated_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11702..12619
DNA (918bp) protein (306aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC6_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:KGI76997.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_430_curated_10
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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12722..13138
DNA (417bp) protein (139aa)
GreA/GreB family elongation factor id=2643717 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
GreA/GreB family elongation factor; K06140 regulator of nucleoside diphosphate kinase
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_p_inoc_scaffold_430_curated_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13284..13706
DNA (423bp) protein (141aa)
Rubrerythrin n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P8_9GAMM
Rubrerythrin {ECO:0000313|EMBL:EIL95489.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
rubrerythrin
scnpilot_p_inoc_scaffold_430_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13820..15166
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037313D8
Fe-S oxidoreductase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_430_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15169..15750
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99570.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF3501)
scnpilot_p_inoc_scaffold_430_curated_14
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15756..16943)
DNA (1188bp) protein (396aa)
Cystathionine gamma-synthase {ECO:0000313|EMBL:KFN44087.1}; EC=2.5.1.48 {ECO:0000313|EMBL:KFN44087.1};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48]
cystathionine gamma-synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3400D
scnpilot_p_inoc_scaffold_430_curated_15
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16940..17929)
DNA (990bp) protein (330aa)
Homoserine O-acetyltransferase {ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00276255};; EC=2.3.1.31 {ECO:0000256|SAAS:SAAS00070942};; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364E55C
scnpilot_p_inoc_scaffold_430_curated_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18148..18666)
DNA (519bp) protein (173aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
adenine phosphoribosyltransferase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A079BB
scnpilot_p_inoc_scaffold_430_curated_17
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18708..18980)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000379D4CF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC86844.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_p_inoc_scaffold_430_curated_18
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19188..19547
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI0003617796
S-adenosylmethionine tRNA ribosyltransferase {ECO:0000313|EMBL:KHD98295.1}; TaxID=136273 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
scnpilot_p_inoc_scaffold_430_curated_19
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19753..21465
DNA (1713bp) protein (571aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368F2B5
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ACL66086.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
scnpilot_p_inoc_scaffold_430_curated_20
unknown

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comp(21877..22947)
DNA (1071bp) protein (357aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_430_curated_21
unknown

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comp(23029..23988)
DNA (960bp) protein (320aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_430_curated_22
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24169..25899
DNA (1731bp) protein (577aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
glutaminyl-tRNA synthetase; K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037C16EC
scnpilot_p_inoc_scaffold_430_curated_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25896..26459
DNA (564bp) protein (188aa)
nucleoside deaminase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C3693
Nucleoside deaminase {ECO:0000313|EMBL:AHX14496.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
cytosine/adenosine deaminase
scnpilot_p_inoc_scaffold_430_curated_24
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26497..27564
DNA (1068bp) protein (356aa)
Ribosomal RNA large subunit methyltransferase M {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058276}; EC=2.1.1.186 {ECO:0000256|HAMAP-Rule:MF_01551, ECO:0000256|SAAS:SAAS00058274};; 23S rRNA (cytidine2498-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01551}; 23S rRNA 2'-O-ribose methyltransferase RlmM {ECO:0000256|HAMAP-Rule:MF_01551}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
RNA 2'-O-ribose methyltransferase; K06968 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000361EB7F
scnpilot_p_inoc_scaffold_430_curated_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27675..30458
DNA (2784bp) protein (928aa)
Putative secreted protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W369_9GAMM
Putative secreted protein {ECO:0000313|EMBL:EIL93910.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K07004
scnpilot_p_inoc_scaffold_430_curated_26
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30691..31527)
DNA (837bp) protein (279aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative S-adenosylmethionine-dependent methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L352_FRAAD
scnpilot_p_inoc_scaffold_430_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31656..33485
DNA (1830bp) protein (610aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C25BC
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AGG90347.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_p_inoc_scaffold_430_curated_28
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33485..33841
DNA (357bp) protein (119aa)
UPF0102 protein PST_1070 n=3 Tax=Pseudomonas stutzeri RepID=Y1070_PSEU5
UPF0102 protein LF63_0112505 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein; K07460 putative endonuclease
scnpilot_p_inoc_scaffold_430_curated_29
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33852..34442
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CD2D3
transporter
Transport-associated protein {ECO:0000313|EMBL:ADE13658.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
scnpilot_p_inoc_scaffold_430_curated_30
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34581..35954
DNA (1374bp) protein (458aa)
oxidoreductase, FAD-binding; K03777 D-lactate dehydrogenase [EC:1.1.1.28] rbh
Oxidoreductase, FAD-binding protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXN1_9GAMM
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:AHX14657.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Displaying items 1-30 of 66 in total

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