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scnpilot_p_inoc_scaffold_681_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_681_curated_1
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..407
DNA (405bp) protein (135aa)
P-type conjugative transfer protein TrbJ n=2 Tax=Pseudomonas aeruginosa RepID=U9GNH5_PSEAI
trbJ; conjugal transfer protein TrbJ
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
scnpilot_p_inoc_scaffold_681_curated_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

420..752
DNA (333bp) protein (111aa)
Putative lipoprotein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH81_ACIET
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ACM32786.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_681_curated_3
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

749..2149
DNA (1401bp) protein (467aa)
Conjugal transfer protein TrbL n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WVJ8_PSEDE
conjugal transfer protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AGI23809.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
scnpilot_p_inoc_scaffold_681_curated_4
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2162..2866
DNA (705bp) protein (235aa)
TrbF-like protein n=8 Tax=Pseudomonas aeruginosa RepID=Q02N59_PSEAB
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AGI23808.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
scnpilot_p_inoc_scaffold_681_curated_5
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2863..3864
DNA (1002bp) protein (334aa)
P-type conjugative transfer protein TrbG n=2 Tax=Comamonadaceae RepID=A9BTR5_DELAS
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
scnpilot_p_inoc_scaffold_681_curated_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3866..5125
DNA (1260bp) protein (420aa)
TrbI-like protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDY9_PSEAI
Conjugative transfer protein TrbI {ECO:0000313|EMBL:EWC39978.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
conjugation TrbI family protein
scnpilot_p_inoc_scaffold_681_curated_7
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5122..5364
DNA (243bp) protein (81aa)
conjugal transfer protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F3A434
Uncharacterized protein {ECO:0000313|EMBL:KGM52050.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
scnpilot_p_inoc_scaffold_681_curated_8
unknown

Not on your lists

6177..7742
DNA (1566bp) protein (522aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_681_curated_9
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8097..8672
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F03AA
Uncharacterized protein {ECO:0000313|EMBL:KGM55031.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
RNA polymerase sigma factor
scnpilot_p_inoc_scaffold_681_curated_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9030..10946
DNA (1917bp) protein (639aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368AA23
Protein kinase {ECO:0000313|EMBL:AHG88777.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
scnpilot_p_inoc_scaffold_681_curated_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11608..12198)
DNA (591bp) protein (197aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036ADA8D
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EYR67406.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
scnpilot_p_inoc_scaffold_681_curated_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12209..14026)
DNA (1818bp) protein (606aa)
excinuclease ABC subunit C n=1 Tax=Dyella japonica RepID=UPI0002E701AF
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Excinuclease ABC subunit C
scnpilot_p_inoc_scaffold_681_curated_13

Not on your lists

comp(14156..15580)
DNA (1425bp) protein (475aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=mine drainage metagenome RepID=T0ZR54_9ZZZZ
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EQD47108.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NHL repeat containing protein
scnpilot_p_inoc_scaffold_681_curated_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15631..16086)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D8F3F
Uncharacterized protein {ECO:0000313|EMBL:KGI78336.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
phosphotyrosine protein phosphatase
scnpilot_p_inoc_scaffold_681_curated_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16083..17015)
DNA (933bp) protein (311aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ21_9GAMM
3-deoxy-D-manno-octulosonate cytidylyltransferase
scnpilot_p_inoc_scaffold_681_curated_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17021..17878
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97437.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
scnpilot_p_inoc_scaffold_681_curated_17
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17910..19610)
DNA (1701bp) protein (567aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036B8229
Uncharacterized protein {ECO:0000313|EMBL:KFN49425.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
scnpilot_p_inoc_scaffold_681_curated_18
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19607..21748)
DNA (2142bp) protein (714aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374E44B
hypothetical protein
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_p_inoc_scaffold_681_curated_19
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21745..22893)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003644D87
Membrane protein {ECO:0000313|EMBL:EQB16009.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
scnpilot_p_inoc_scaffold_681_curated_20
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22890..23735)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374C905
Uncharacterized protein {ECO:0000313|EMBL:KFN51720.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_681_curated_21
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23786..24781)
DNA (996bp) protein (332aa)
methanol dehydrogenase regulator; K03924 MoxR-like ATPase [EC:3.6.3.-]
ATPase AAA n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F82FF
MoxR-like ATPase {ECO:0000313|EMBL:EIT68732.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
scnpilot_p_inoc_scaffold_681_curated_22
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24841..25566)
DNA (726bp) protein (242aa)
Putative uncharacterized protein id=2635557 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_p_inoc_scaffold_681_curated_23
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25677..27011)
DNA (1335bp) protein (445aa)
Peptidase u62 modulator of DNA gyrase n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T467_9GAMM
Peptidase u62 modulator of DNA gyrase {ECO:0000313|EMBL:EIT68730.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
peptidase u62 modulator of DNA gyrase
scnpilot_p_inoc_scaffold_681_curated_24
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27029..28663)
DNA (1635bp) protein (545aa)
TldD protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382B284
Peptidase u62 modulator of DNA gyrase {ECO:0000313|EMBL:EIT68729.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
peptidase u62 modulator of DNA gyrase; K03568 TldD protein
scnpilot_p_inoc_scaffold_681_curated_25
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28819..30453)
DNA (1635bp) protein (545aa)
TldD protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382B284
Peptidase u62 modulator of DNA gyrase {ECO:0000313|EMBL:EIT68729.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
peptidase u62 modulator of DNA gyrase; K03568 TldD protein
scnpilot_p_inoc_scaffold_681_curated_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30659..32221)
DNA (1563bp) protein (521aa)
UPF0061 protein UU9_07049 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTK1_9GAMM
UPF0061 protein UU9_07049 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_681_curated_27

Not on your lists

32386..32511
DNA (126bp) protein (42aa)
50S ribosomal protein L36 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AIA6_9ZZZZ
50S ribosomal protein L36 {ECO:0000313|EMBL:EQD62775.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
scnpilot_p_inoc_scaffold_681_curated_28

Not on your lists

32681..32980
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348BD72
Uncharacterized protein {ECO:0000313|EMBL:EQD41709.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_681_curated_29
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33010..34029
DNA (1020bp) protein (340aa)
Peptidylarginine deiminase-like enzyme n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L0V3_FRAAD
peptidylarginine deiminase-like protein
Peptidylarginine deiminase-like enzyme {ECO:0000313|EMBL:AFC85359.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_p_inoc_scaffold_681_curated_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34114..35001
DNA (888bp) protein (296aa)
apolipoprotein acyltransferase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003691B1C
putative amidohydrolase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 41 in total

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