ggKbase home page

SCNpilot_BF_INOC_scaffold_1016

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1016_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1008)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B2299
periplasmic protease
Serine protease SohB {ECO:0000313|EMBL:AAZ98582.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus deni
SCNpilot_BF_INOC_scaffold_1016_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1060..1275)
DNA (216bp) protein (72aa)
Membrane protein, putative n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFM5_THIDA
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:AAZ98581.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillu
SCNpilot_BF_INOC_scaffold_1016_3
unknown

Not on your lists

comp(1319..1408)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1016_4
CG_Mariprof_05, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1890..2351
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Burkholderia terrae BS001 RepID=I5D495_9BURK
hypothetical protein Tax=CG_Mariprof_05
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_5
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2454..3839
DNA (1386bp) protein (462aa)
putative ATP-binding protein; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=GWC2_Geobacteraceae_53_11_curated
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036B729B
putative transcriptional regulator
SCNpilot_BF_INOC_scaffold_1016_6
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3929..4498
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Neisseria sp. GT4A_CT1 RepID=G3Z5Y4_9NEIS
cold shock protein
Cold shock protein {ECO:0000313|EMBL:BAO81189.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_BF_INOC_scaffold_1016_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4458..5759)
DNA (1302bp) protein (434aa)
Rubisco operon transcriptional regulator id=1331606 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cbbR1; transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
cbbR1; transcriptional regulator
SCNpilot_BF_INOC_scaffold_1016_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5923..7344
DNA (1422bp) protein (474aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] Tax=GWE1_Thiobacillus_62_9_curated
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain id=1331605 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_BF_INOC_scaffold_1016_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7440..7796
DNA (357bp) protein (119aa)
cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS) (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] Tax=GWE1_Thiobacillus_62_
cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS) (EC:4.1.1.39)
Ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (Type I) small subunit (CbbS) id=1331604 bin=GWE1_T_denit_62_9 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_BF_INOC_scaffold_1016_10
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7983..8786
DNA (804bp) protein (268aa)
ATPase AAA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F41AB
cbbQ; Rubisco activation protein
Rubisco activation protein {ECO:0000313|EMBL:ABF08382.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metall
SCNpilot_BF_INOC_scaffold_1016_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8858..11215
DNA (2358bp) protein (786aa)
Rubisco activation protein CbbO id=1331602 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cbbO1; rubisco activation protein CbbO Tax=GWE1_Thiobacillus_62_9_curated
cbbO1; rubisco activation protein CbbO
SCNpilot_BF_INOC_scaffold_1016_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11225..11521
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN96_RALME
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11530..13170)
DNA (1641bp) protein (547aa)
Sulfate permease, SulP family id=1331596 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SulP family sulfate permease; K03321 sulfate permease, SulP family Tax=GWE1_Thiobacillus_62_9_curated
SulP family sulfate permease
SCNpilot_BF_INOC_scaffold_1016_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13180..13740)
DNA (561bp) protein (187aa)
hypothetical protein id=12494918 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13834..14925)
DNA (1092bp) protein (364aa)
hypothetical protein; K07090 id=12494919 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K07090 Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14956..15270)
DNA (315bp) protein (105aa)
Putative uncharacterized protein id=1331592 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_17
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15308..15682)
DNA (375bp) protein (125aa)
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_BF_INOC_scaffold_1016_18
unknown

Not on your lists

comp(15682..15870)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1016_19
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16024..17472
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FABFC
integral membrane sensor signal transduction histidine kinase Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
sensory transduction protein kinase
SCNpilot_BF_INOC_scaffold_1016_20
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17469..18821
DNA (1353bp) protein (451aa)
nitrogen regulation protein NR(I) n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B7355
response regulator HsfA Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
response regulator HsfA
SCNpilot_BF_INOC_scaffold_1016_21
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18922..21057
DNA (2136bp) protein (712aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037269B4
sulfate transporter Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
sulfate transporter
SCNpilot_BF_INOC_scaffold_1016_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21368..22069
DNA (702bp) protein (234aa)
Two component Transcriptional regulator, Winged helix family id=1331591 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
two component transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
two component transcriptional regulator
SCNpilot_BF_INOC_scaffold_1016_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22059..23324
DNA (1266bp) protein (422aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales
Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFP3_THIDA
periplasmic sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_1016_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23408..25219
DNA (1812bp) protein (604aa)
Sulphate anion transporter id=1329447 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sulfate anion transporter Tax=GWE1_Thiobacillus_62_9_curated
sulfate anion transporter
SCNpilot_BF_INOC_scaffold_1016_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25212..25697
DNA (486bp) protein (162aa)
Putative uncharacterized protein id=1329448 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25701..26129)
DNA (429bp) protein (143aa)
hypothetical protein id=12494924 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26241..26612
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C1680
putative thioredoxin-like protein Tax=GWE1_Thiobacillus_62_9_curated
thioredoxin-like protein
SCNpilot_BF_INOC_scaffold_1016_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26605..27087
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371010D
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1016_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27100..27615)
DNA (516bp) protein (172aa)
LysR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000382A5F5
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA Tax=GWE1_Thiobacillus_62_9_curated
LysR family transcriptional regulator
Displaying 29 items

View Taxonomy