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SCNpilot_BF_INOC_scaffold_2017

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2017_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..119)
DNA (117bp) protein (39aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ84_THIDA
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_2

Not on your lists

comp(367..1380)
DNA (1014bp) protein (338aa)
Putative Phage integrase n=1 Tax=mine drainage metagenome RepID=E6QW46_9ZZZZ
Putative Phage integrase {ECO:0000313|EMBL:CBI11469.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_3
CG_Gallio_03, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1373..2347)
DNA (975bp) protein (325aa)
Putative Phage integrase n=1 Tax=mine drainage metagenome RepID=E6QW45_9ZZZZ
hypothetical protein Tax=CG_Gallio_03
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_4

Not on your lists

comp(2344..3303)
DNA (960bp) protein (320aa)
Putative integrase n=1 Tax=mine drainage metagenome RepID=E6QW43_9ZZZZ
Putative integrase {ECO:0000313|EMBL:CBI11466.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integrase family protein
SCNpilot_BF_INOC_scaffold_2017_5
unknown

Not on your lists

comp(3349..3531)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2017_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3588..3923)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624EA5
putative metal-dependent hydrolase
Putative metal-dependent hydrolase {ECO:0000313|EMBL:CAZ88065.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (st
SCNpilot_BF_INOC_scaffold_2017_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3929..6850)
DNA (2922bp) protein (974aa)
type I restriction-modification system, R subunit (EC:3.1.21.3)
Type I restriction-modification system, R subunit {ECO:0000313|EMBL:ACK79055.1}; EC=3.1.21.3 {ECO:0000313|EMBL:ACK79055.1};; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidit
Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPM1_ACIF5
SCNpilot_BF_INOC_scaffold_2017_8
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6853..8151)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4QI70_PSECO
Uncharacterized protein {ECO:0000313|EMBL:ESR01503.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlor
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_9
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

comp(8148..8945)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WM87_VEREI
hypothetical protein Tax=CG_Elusi_04
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_10
Chlorobium phaeobacteroides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(8942..10171)
DNA (1230bp) protein (410aa)
Restriction modification system DNA specificity domain n=1 Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3ELH4_CHLPB
restriction modification system DNA specificity domain rbh
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ACE03303.1}; TaxID=331678 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Ch
SCNpilot_BF_INOC_scaffold_2017_11
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(10168..10599)
DNA (432bp) protein (144aa)
type I restriction-modification system, M subunit (EC:2.1.1.72)
DNA methyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E9E
Tax=BJP_IG2102_BRC1_58_13
SCNpilot_BF_INOC_scaffold_2017_12
unknown

Not on your lists

11395..11730
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2017_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12193..12477
DNA (285bp) protein (95aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003671370
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
histone family protein DNA-binding protein
SCNpilot_BF_INOC_scaffold_2017_14
Thiobacillus sp. SCN2, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12554..12847
DNA (294bp) protein (98aa)
hypothetical protein id=12498594 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein id=12498594 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_BF_INOC_scaffold_2017_15
unknown

Not on your lists

12861..13292
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2017_16

Not on your lists

13653..14594
DNA (942bp) protein (314aa)
Putative integrase n=1 Tax=uncultured bacterium RepID=I6ZME9_9BACT
Putative integrase {ECO:0000313|EMBL:AFN66379.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_17

Not on your lists

14591..14893
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=I6YQ09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AFN66378.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_BF_INOC_scaffold_2017_18
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15069..15323)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWJ7_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI10567.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (
SCNpilot_BF_INOC_scaffold_2017_19
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15427..16272)
DNA (846bp) protein (282aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI81_THIDA
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2017_20

Not on your lists

comp(16269..16553)
DNA (285bp) protein (95aa)
Prophage CP4-57 regulatory n=1 Tax=mine drainage metagenome RepID=T0Z8M1_9ZZZZ
Prophage CP4-57 regulatory {ECO:0000313|EMBL:EQD26105.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_BF_INOC_scaffold_2017_21
unknown

Not on your lists

comp(16657..16926)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2017_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17553..18074
DNA (522bp) protein (174aa)
molecular chaperone GrpE n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A7CD
molecular chaperone protein GrpE; K03687 molecular chaperone GrpE Tax=GWE1_Thiobacillus_62_9_curated
molecular chaperone protein GrpE
SCNpilot_BF_INOC_scaffold_2017_23
unknown

Not on your lists

18160..18222
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 23 items

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