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SCNpilot_BF_INOC_scaffold_3371

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3371_1
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..928
DNA (927bp) protein (309aa)
conjugal transfer protein TrbE n=1 Tax=Xanthomonas axonopodis RepID=UPI00031FCE76
conjugal transfer protein TrbE
CagE, TrbE, VirB component of type IV transporter system {ECO:0000313|EMBL:EAO12325.1}; Flags: Precursor;; TaxID=155919 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthom
SCNpilot_BF_INOC_scaffold_3371_2
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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932..1636
DNA (705bp) protein (235aa)
conjugal transfer protein TrbF n=1 Tax=Xanthomonas axonopodis RepID=UPI0002F139E7
conjugal transfer protein TrbF rbh
Conjugal transfer protein {ECO:0000313|EMBL:AAF84853.1}; TaxID=160492 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa (
SCNpilot_BF_INOC_scaffold_3371_3

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1648..2538
DNA (891bp) protein (297aa)
conjugal transfer protein TrbG n=2 Tax=Xanthomonas axonopodis RepID=UPI0002F1D011
TrbG mating pair formation protein {ECO:0000313|EMBL:AGH89275.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugal transfer protein TrbG rbh
SCNpilot_BF_INOC_scaffold_3371_4
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2538..3014
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002DFEAD9
conjugal transfer protein TrbH
Conjugal transfer protein {ECO:0000313|EMBL:AAF84851.1}; TaxID=160492 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa (
SCNpilot_BF_INOC_scaffold_3371_5
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4463..5197
DNA (735bp) protein (245aa)
Putative conjugal transfer protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UDQ4_XANAP
conjugal transfer protein
Putative conjugal transfer protein {ECO:0000313|EMBL:CBA16068.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthom
SCNpilot_BF_INOC_scaffold_3371_6
unknown

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5213..5410
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3371_7
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5422..6855
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002D681BE
putative plasmid conjugal transfer protein rbh
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ERI30436.1}; TaxID=985077 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderi
SCNpilot_BF_INOC_scaffold_3371_8

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6906..7460
DNA (555bp) protein (185aa)
conjugal transfer protein TrbM n=1 Tax=Aeromonas caviae RepID=UPI0002198596
TrbM protein {ECO:0000313|EMBL:ABO36556.1}; TaxID=429581 species="Bacteria; environmental samples.;" source="uncultured bacterium pMCBF6.;"
conjugal transfer protein TrbM
SCNpilot_BF_INOC_scaffold_3371_9
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7463..8077
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00031C1E42
conjugal transfer protein TrbN
Conjugal transfer protein TrbN {ECO:0000313|EMBL:AIC12628.1}; TaxID=1401256 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastid
SCNpilot_BF_INOC_scaffold_3371_10
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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8100..8555
DNA (456bp) protein (152aa)
Transcriptional regulator, MucR family n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RCH1_DESPD
MucR family transcriptional regulator
Transcriptional regulator, MucR family {ECO:0000313|EMBL:ADW18917.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source=
SCNpilot_BF_INOC_scaffold_3371_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8692..8976)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Escherichia coli MP021561.2 RepID=M9G4Z2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMX27664.1}; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
SCNpilot_BF_INOC_scaffold_3371_12
unknown

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comp(9082..9249)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3371_13

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comp(9340..9759)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=A1Y2X4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ABI20492.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3371_14
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9969..10490)
DNA (522bp) protein (174aa)
integrase n=1 Tax=Nevskia ramosa RepID=UPI0003B6808F
Site-specific recombinase XerC {ECO:0000313|EMBL:CDS55325.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas s
int; putative site specific integrase
Displaying 14 items

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