ggKbase home page

SCNpilot_BF_INOC_scaffold_4489

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_4489_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..518)
DNA (516bp) protein (172aa)
Outer membrane protein assembly factor BamD n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0Q3_THIK1
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" sour
outer membrane assembly lipoprotein YfiO
SCNpilot_BF_INOC_scaffold_4489_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

577..1344
DNA (768bp) protein (256aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;"
rluD; Ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) (EC:5.4.99.-)
Ribosomal large subunit pseudouridine synthase D (RRNA-uridine isomerase D) (RRNA pseudouridylate synthase D) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSP5_THIA3
SCNpilot_BF_INOC_scaffold_4489_3
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1283..2227
DNA (945bp) protein (315aa)
Putative uncharacterized protein id=2082102 bin=GWD2_Bacteroidales_45_23 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
subtilase family serine protease Tax=GWC2_Bacteroidetes_46_850_curated
exported serine protease, subtilase family
SCNpilot_BF_INOC_scaffold_4489_4
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2262..3503
DNA (1242bp) protein (414aa)
xseA; exodeoxyribonuclease VII, large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00195506};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyro
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000361BEB5
SCNpilot_BF_INOC_scaffold_4489_5
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3511..4050
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VBG3_9BACT
hypothetical protein Tax=GWA2_Bacteroidetes_31_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_4489_6
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4047..4244
DNA (198bp) protein (66aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00198686};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyro
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036BD1DE
hypothetical protein
SCNpilot_BF_INOC_scaffold_4489_7
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4251..4793
DNA (543bp) protein (181aa)
putative terpenoid biosynthesis-related protein; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=GWC2_Bacteroidetes_46_850_curated
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037B23B5
SCNpilot_BF_INOC_scaffold_4489_8
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5062..5535
DNA (474bp) protein (158aa)
asnC; transcriptional regulator
Transcriptional regulator id=4781691 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_BF_INOC_scaffold_4489_9
Bacteroides uniformis CAG:3, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5670..6257
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003724115
Uncharacterized protein {ECO:0000313|EMBL:CDE00181.1}; TaxID=1263055 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bactero
hypothetical protein
SCNpilot_BF_INOC_scaffold_4489_10
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6250..6534
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6AEW6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN14248.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnson
transcriptional regulator
SCNpilot_BF_INOC_scaffold_4489_11
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6996..7709
DNA (714bp) protein (238aa)
Putative uncharacterized protein id=1810478 bin=GWE2_Bacteroidetes_42_39 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein Tax=GWE2_Bacteroidetes_42_39_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_4489_12
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7749..8402
DNA (654bp) protein (218aa)
Putative uncharacterized protein id=1810478 bin=GWE2_Bacteroidetes_42_39 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein Tax=GWE2_Bacteroidetes_42_39_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_4489_13
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8535..8810
DNA (276bp) protein (92aa)
Uncharacterized protein id=1810480 bin=GWE2_Bacteroidetes_42_39 species=Agrobacterium albertimagni genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
MlrC C-terminus family Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_BF_INOC_scaffold_4489_14
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8791..9993
DNA (1203bp) protein (401aa)
Uncharacterized protein id=1810480 bin=GWE2_Bacteroidetes_42_39 species=Agrobacterium albertimagni genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
MlrC C-terminus family Tax=GWE2_Bacteroidetes_42_39_curated
microcystin degradation protein MlrC
SCNpilot_BF_INOC_scaffold_4489_15
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10005..10304)
DNA (300bp) protein (100aa)
Xylose permease id=3591362 bin=GWC2_Bacteroidetes_46_850 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
major facilitator transporter Tax=GWC2_Bacteroidetes_46_850_curated
D-xylose transporter XylE
Displaying 15 items

View Taxonomy