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SCNpilot_BF_INOC_scaffold_2480

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2480_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..164)
DNA (162bp) protein (54aa)
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD id=12492979 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
biopolymer transport protein ExbD/TolR
SCNpilot_BF_INOC_scaffold_2480_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168..896)
DNA (729bp) protein (243aa)
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB id=12492980 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
MotA/TolQ/ExbB proton channel family protein
SCNpilot_BF_INOC_scaffold_2480_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(898..1602)
DNA (705bp) protein (235aa)
TonB protein; K03832 periplasmic protein TonB id=12492981 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
TonB protein; K03832 periplasmic protein TonB Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
TonB protein
SCNpilot_BF_INOC_scaffold_2480_4
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1605..3869)
DNA (2265bp) protein (755aa)
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein id=12492982 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
outer membrane receptor protein Tax=RBG_16_Gamma2_64_11_curated
tonB dependent receptor family protein
SCNpilot_BF_INOC_scaffold_2480_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3913..4395)
DNA (483bp) protein (161aa)
signal peptide protein id=12492983 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
signal peptide protein
Possible signal peptide protein {ECO:0000313|EMBL:AAZ96861.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillu
SCNpilot_BF_INOC_scaffold_2480_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4392..5615)
DNA (1224bp) protein (408aa)
BNR repeat-containing protein id=12492984 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Putative signal peptide protein {ECO:0000313|EMBL:CCU62360.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
BNR repeat-containing protein
SCNpilot_BF_INOC_scaffold_2480_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5799..6578)
DNA (780bp) protein (260aa)
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] id=12492985 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
dihydropteroate synthase (EC:2.5.1.15)
SCNpilot_BF_INOC_scaffold_2480_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6629..7168)
DNA (540bp) protein (180aa)
Phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] id=12492986 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Phosphoglycerate mutase
SCNpilot_BF_INOC_scaffold_2480_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7165..7965)
DNA (801bp) protein (267aa)
formylmethanofuran dehydrogenase subunit C (EC:1.2.99.5); K00202 formylmethanofuran dehydrogenase subunit C [EC:1.2.99.5] id=12492987 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
formylmethanofuran dehydrogenase subunit C (EC:1.2.99.5)
putative formylmethanofuran dehydrogenase,subunit C Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_BF_INOC_scaffold_2480_10
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7962..8858)
DNA (897bp) protein (299aa)
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101); K00672 formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] id=12492988 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101)
Formylmethanofuran--tetrahydromethanopterin formyltransferase; EC=2.3.1.101;; H4MPT formyltransferase; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococc
SCNpilot_BF_INOC_scaffold_2480_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8855..10519)
DNA (1665bp) protein (555aa)
formylmethanofurane dehydrogenase subunit A; K00200 formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5] id=12492989 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
formylmethanofurane dehydrogenase subunit A; K00200 formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
formylmethanofurane dehydrogenase subunit A
SCNpilot_BF_INOC_scaffold_2480_12
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10506..11807)
DNA (1302bp) protein (434aa)
formylmethanofuran dehydrogenase (EC:1.2.99.5); K00201 formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5] id=12492990 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
formylmethanofuran dehydrogenase (EC:1.2.99.5)
Tax=BJP_S1_SUB10_Methylophilales_55_32
SCNpilot_BF_INOC_scaffold_2480_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12092..13024
DNA (933bp) protein (311aa)
beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein id=12492991 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein
SCNpilot_BF_INOC_scaffold_2480_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13047..13949
DNA (903bp) protein (301aa)
mtdB; methylene tetrahydromethanopterin dehydrogenase MtdB (EC:1.5.1.-); K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] id=12492992 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
mtdB2; NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase; K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
mtdB; methylene tetrahydromethanopterin dehydrogenase MtdB (EC:1.5.1.-)
SCNpilot_BF_INOC_scaffold_2480_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13939..15126
DNA (1188bp) protein (396aa)
hypothetical protein id=12492993 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2480_16
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15123..16100
DNA (978bp) protein (326aa)
methenyltetrahydromethanopterin cyclohydrolase (EC:3.5.4.27); K01499 methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] id=12492994 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Methenyltetrahydromethanopterin cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; EC=3.5.4.27 {ECO:0000256|HAMAP-Rule:MF_00486};; Methenyl-H4MPT cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; TaxID
methenyltetrahydromethanopterin cyclohydrolase (EC:3.5.4.27)
SCNpilot_BF_INOC_scaffold_2480_17
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16300..16947
DNA (648bp) protein (216aa)
RimK family alpha-L-glutamate ligase id=12492995 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EGK72336.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatili
RimK family alpha-L-glutamate ligase
SCNpilot_BF_INOC_scaffold_2480_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16944..17855
DNA (912bp) protein (304aa)
hypothetical protein; K05966 triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25] id=12492996 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
triphosphoribosyl-dephospho-CoA protein; K05966 triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2480_19
Thiobacillus sp. SCN1, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17848..17964
DNA (117bp) protein (39aa)
id=12492997 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
id=12492997 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
SCNpilot_BF_INOC_scaffold_2480_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17964..18476
DNA (513bp) protein (171aa)
formaldehyde-activating enzyme; K10713 formaldehyde-activating enzyme [EC:4.3.-.-] id=12492998 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
formaldehyde-activating enzyme; K10713 formaldehyde-activating enzyme [EC:4.3.-.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
formaldehyde-activating protein
SCNpilot_BF_INOC_scaffold_2480_21
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18491..19714
DNA (1224bp) protein (408aa)
queuosine biosynthesis protein QueD; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] id=12492999 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Putative uncharacterized protein {ECO:0000313|EMBL:EGV33362.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodoco
queuosine biosynthesis protein QueD
SCNpilot_BF_INOC_scaffold_2480_22
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19623..20345)
DNA (723bp) protein (241aa)
histidine biosynthesis protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] id=12493000 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
histidine biosynthesis protein
Histidine biosynthesis protein {ECO:0000313|EMBL:ADH88078.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella
SCNpilot_BF_INOC_scaffold_2480_23
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20431..21372
DNA (942bp) protein (314aa)
hypothetical protein id=12493001 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EGF31250.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9
hypothetical protein
SCNpilot_BF_INOC_scaffold_2480_24
Methylocapsa acidiphila, Methylocapsa, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21369..22478
DNA (1110bp) protein (370aa)
H4MPT-linked C1 transfer pathway protein id=12493002 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Predicted transcriptional regulator/sugar kinase, (COG1548) {ECO:0000313|EMBL:CAJ01581.2}; TaxID=133552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methyloca
H4MPT-linked C1 transfer pathway protein
SCNpilot_BF_INOC_scaffold_2480_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22469..22759
DNA (291bp) protein (97aa)
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85] id=12493003 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-)
Displaying 25 items

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