ggKbase home page

SCNpilot_BF_INOC_scaffold_1023

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1023_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..946
DNA (945bp) protein (315aa)
6-phosphofructokinase (EC:2.7.1.90); K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
6-phosphofructokinase (EC:2.7.1.90)
6-phosphofructokinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003740863
SCNpilot_BF_INOC_scaffold_1023_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1029..1241
DNA (213bp) protein (71aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein id=12493577 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1304..3346
DNA (2043bp) protein (681aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003638A2B
SCNpilot_BF_INOC_scaffold_1023_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3442..3648
DNA (207bp) protein (69aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein id=12493575 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3714..4319
DNA (606bp) protein (202aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036626DA
outer membrane lipoprotein carrier protein LolA; K03634 outer membrane lipoprotein carrier protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
outer membrane lipoprotein carrier protein LolA
SCNpilot_BF_INOC_scaffold_1023_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4576..5907
DNA (1332bp) protein (444aa)
ATPase AAA n=1 Tax=Thiobacillus thioparus RepID=UPI00037041EC
recombination factor protein RarA; K07478 putative ATPase Tax=GWE1_Thiobacillus_62_9_curated
recombination factor protein RarA
SCNpilot_BF_INOC_scaffold_1023_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6003..6419
DNA (417bp) protein (139aa)
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Putative uncharacterized protein id=1327872 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6432..7112
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E7D76
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7210..7680
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4ECF
protein of unknown function DUF1791 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7668..10574)
DNA (2907bp) protein (969aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B7176
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1023_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10963..11964
DNA (1002bp) protein (334aa)
putative periplasmic protease; K04774 serine protease SohB [EC:3.4.21.-] id=12493565 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
periplasmic protease
Serine protease SohB {ECO:0000313|EMBL:AAZ98582.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus deni
SCNpilot_BF_INOC_scaffold_1023_12
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12152..14515
DNA (2364bp) protein (788aa)
Type I site-specific deoxyribonuclease n=1 Tax=Thiocapsa marina 5811 RepID=F9U565_9GAMM
helicase, type I site-specific restriction-modification system restriction subunit Tax=GWA2_Rhodocyclales_65_20_curated
helicase, type I site-specific restriction-modification system restriction subunit
SCNpilot_BF_INOC_scaffold_1023_13
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14518..15360
DNA (843bp) protein (281aa)
DNA-binding protein n=1 Tax=Desulfovibrio sp. Dsv1 RepID=UPI0003B7AC77
hypothetical protein Tax=GWA2_Rhodocyclales_65_20_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_14
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15364..16845
DNA (1482bp) protein (494aa)
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:EGV20289.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EGV20289.1};; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; C
adenine-specific DNA-methyltransferase (EC:2.1.1.72)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Thiocapsa marina 5811 RepID=F9U566_9GAMM
SCNpilot_BF_INOC_scaffold_1023_15
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16842..19043
DNA (2202bp) protein (734aa)
Type I restriction-modification system, S subunit n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I6S0_BORPD
type I restriction-modification system subunit S
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:CAP44335.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" sour
SCNpilot_BF_INOC_scaffold_1023_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19188..20153
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C110A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97439.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
SCNpilot_BF_INOC_scaffold_1023_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20605..22464)
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037551CD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97438.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
SCNpilot_BF_INOC_scaffold_1023_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22659..23081)
DNA (423bp) protein (141aa)
twitching motility protein PilT n=1 Tax=Thiobacillus thioparus RepID=UPI000378EA20
PilT protein domain-containing protein; K07062 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
twitching motility protein PilT
SCNpilot_BF_INOC_scaffold_1023_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23078..23332)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361D831
prevent-host-death family protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
prevent-host-death family protein
SCNpilot_BF_INOC_scaffold_1023_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23422..23676)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B159A
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_BF_INOC_scaffold_1023_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23802..24404
DNA (603bp) protein (201aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] Tax=GWE1_Thiobacillus_62_9_curated
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
umuDC operon protein-like protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378691D
SCNpilot_BF_INOC_scaffold_1023_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24614..25450
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EB2DE
endonuclease Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
type II restriction endonuclease, zinc finger
SCNpilot_BF_INOC_scaffold_1023_23
unknown

Not on your lists

comp(25417..25671)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1023_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25713..28760
DNA (3048bp) protein (1016aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIU2_THIDA
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_BF_INOC_scaffold_1023_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28864..29481
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000363CDE2
nitroreductase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
nitroreductase
SCNpilot_BF_INOC_scaffold_1023_26
unknown

Not on your lists

29502..29594
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1023_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29591..30184
DNA (594bp) protein (198aa)
Uncharacterized protein id=1324492 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30228..30479
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003690C6F
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_BF_INOC_scaffold_1023_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30600..31088
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371C6BA
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1023_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31160..31777)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367368D
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy