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SCNpilot_BF_INOC_scaffold_5884

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_5884_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..917
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003826C00
conjugal transfer protein TrbL
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_BF_INOC_scaffold_5884_2
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

944..1651
DNA (708bp) protein (236aa)
conjugal transfer protein TrbF n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D7A3
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP47671.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1
SCNpilot_BF_INOC_scaffold_5884_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1648..2661
DNA (1014bp) protein (338aa)
conjugative transfer protein TrbG n=1 Tax=Thiobacillus denitrificans RepID=UPI00036410B2
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
conjugal transfer protein TrbG
SCNpilot_BF_INOC_scaffold_5884_4

Not on your lists

2664..3938
DNA (1275bp) protein (425aa)
Conjugation TrbI family protein n=1 Tax=mine drainage metagenome RepID=E6PRZ4_9ZZZZ
Conjugation TrbI family protein {ECO:0000313|EMBL:CBH97700.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conjugal transfer protein TrbI
SCNpilot_BF_INOC_scaffold_5884_5

Not on your lists

3935..4162
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003638244
Uncharacterized protein {ECO:0000313|EMBL:CBH97701.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_5884_6
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4521..5003)
DNA (483bp) protein (161aa)
YHS domain-containing protein id=12498618 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
YHS domain-containing protein Tax=RBG_16_Betaproteobacteria_56_24_curated
YHS domain-containing protein
SCNpilot_BF_INOC_scaffold_5884_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4987..7116)
DNA (2130bp) protein (710aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] id=12498619 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AAZ98693.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source
heavy metal translocating P-type ATPase
SCNpilot_BF_INOC_scaffold_5884_8
unknown

Not on your lists

7398..7658
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_5884_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7655..7975)
DNA (321bp) protein (107aa)
hypothetical protein id=12498620 bin=THIO_MID species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_BF_INOC_scaffold_5884_10
Thiobacillus sp. SCN2, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8018..8299)
DNA (282bp) protein (94aa)
id=12497687 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
id=12497687 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_BF_INOC_scaffold_5884_11
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8359..8598)
DNA (240bp) protein (80aa)
hypothetical protein id=12498621 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36050.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
SCNpilot_BF_INOC_scaffold_5884_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8696..9433)
DNA (738bp) protein (246aa)
Uncharacterized protein id=1362317 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_5884_13
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9515..9772)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6B5_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36052.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
Displaying 13 items

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