ggKbase home page

SCNpilot_BF_INOC_scaffold_101

Search features with annotation key words

Displaying items 391-420 of 426 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_101_391
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396426..397631)
DNA (1206bp) protein (402aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:6.3.2.5 4.1.1.36); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] id=12496290 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
DNA/pantothenate metabolism flavoprotein {ECO:0000313|EMBL:AAZ98540.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sourc
SCNpilot_BF_INOC_scaffold_101_392
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

397666..398340
DNA (675bp) protein (225aa)
DNA repair protein RadC; K03630 DNA repair protein RadC id=12496289 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA repair protein RadC
SCNpilot_BF_INOC_scaffold_101_393
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


398462..398698
DNA (237bp) protein (79aa)
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 id=12496288 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=GWE1_Thiobacillus_62_9_curated
rpmB; 50S ribosomal protein L28
SCNpilot_BF_INOC_scaffold_101_394
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


398714..398881
DNA (168bp) protein (56aa)
50S ribosomal protein L33
50S ribosomal protein L33P; K02913 large subunit ribosomal protein L33 id=12496287 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
50S ribosomal protein L33P; K02913 large subunit ribosomal protein L33 Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_BF_INOC_scaffold_101_395
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(398977..400152)
DNA (1176bp) protein (392aa)
fatty acid desaturase; K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1] id=12496286 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
fatty acid desaturase; K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
fatty acid desaturase
SCNpilot_BF_INOC_scaffold_101_396
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(400210..401508)
DNA (1299bp) protein (433aa)
hypothetical protein id=12496285 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_101_397
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(401519..402736)
DNA (1218bp) protein (406aa)
long chain fatty acid transport protein; K06076 long-chain fatty acid transport protein id=12496284 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
long chain fatty acid transport protein; K06076 long-chain fatty acid transport protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
long chain fatty acid transport protein
SCNpilot_BF_INOC_scaffold_101_398
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(402764..404581)
DNA (1818bp) protein (606aa)
long-chain fatty-acid-CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] id=12496283 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
long-chain fatty-acid-CoA ligase
Long-chain fatty-acid-CoA ligase {ECO:0000313|EMBL:AAZ98550.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiob
SCNpilot_BF_INOC_scaffold_101_399
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(404640..405887)
DNA (1248bp) protein (416aa)
putative tRNA and rRNA cytosine-C5-methylase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] id=12496282 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative tRNA and rRNA cytosine-C5-methylase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=GWE1_Thiobacillus_62_9_curated
tRNA and rRNA cytosine-C5-methylase
SCNpilot_BF_INOC_scaffold_101_400
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(405974..407029)
DNA (1056bp) protein (352aa)
hypothetical protein id=12496281 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_101_401
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(407068..408027)
DNA (960bp) protein (320aa)
hypothetical protein id=12496280 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_101_402
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(408044..408922)
DNA (879bp) protein (293aa)
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-] id=12496279 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
heat shock protein HtpX
SCNpilot_BF_INOC_scaffold_101_403
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

409045..409947
DNA (903bp) protein (301aa)
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA id=12496278 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
LysR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_101_404
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(409948..410370)
DNA (423bp) protein (141aa)
hypothetical protein id=12496277 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_101_405
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(410363..410731)
DNA (369bp) protein (123aa)
putative thioredoxin-like protein id=12496276 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative thioredoxin-like protein Tax=GWE1_Thiobacillus_62_9_curated
thioredoxin-like protein
SCNpilot_BF_INOC_scaffold_101_406
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(410862..412676)
DNA (1815bp) protein (605aa)
sulfate anion transporter id=12496275 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfate anion transporter
Sulphate anion transporter {ECO:0000313|EMBL:AAZ98562.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;"
SCNpilot_BF_INOC_scaffold_101_407
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(412755..414023)
DNA (1269bp) protein (423aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales
periplasmic sensor signal transduction histidine kinase id=12496274 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
periplasmic sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_101_408
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(414013..414714)
DNA (702bp) protein (234aa)
two component transcriptional regulator id=12496273 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
two component transcriptional regulator
Two component Transcriptional regulator, Winged helix family {ECO:0000313|EMBL:AAZ98564.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hy
SCNpilot_BF_INOC_scaffold_101_409
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(414818..416233)
DNA (1416bp) protein (472aa)
Fis family transcriptional regulator id=12496272 bin=THIO_MID species=Thioalkalivibrio sp. ALE12 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
Fis family transcriptional regulator
SCNpilot_BF_INOC_scaffold_101_410
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(416176..417726)
DNA (1551bp) protein (517aa)
integral membrane sensor signal transduction histidine kinase id=12496271 bin=THIO_MID species=Thioalkalivibrio sp. AKL11 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
integral membrane sensor signal transduction histidine kinase Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
integral membrane sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_101_411
Thiobacillus sp. SCN2, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

417837..418412
DNA (576bp) protein (192aa)
id=12496270 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
id=12496270 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_BF_INOC_scaffold_101_412
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

418458..420533
DNA (2076bp) protein (692aa)
sulfate transporter id=12496269 bin=THIO_MID species=Thioalkalivibrio sp. HL-Eb18 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:ADC71500.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivib
SCNpilot_BF_INOC_scaffold_101_413
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(420595..420894)
DNA (300bp) protein (100aa)
hypothetical protein id=12496268 bin=THIO_MID species=Thiomonas arsenitoxydans genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ86908.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22
SCNpilot_BF_INOC_scaffold_101_414
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(420899..421723)
DNA (825bp) protein (275aa)
putative Trypsin-like serine protease id=12496267 bin=THIO_MID species=Thiomonas arsenitoxydans genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative Trypsin-like serine protease
Putative Trypsin-like serine protease {ECO:0000313|EMBL:CAZ86907.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans
SCNpilot_BF_INOC_scaffold_101_415
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(421726..423855)
DNA (2130bp) protein (710aa)
sulfate transporter id=12496266 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Sulfate transporter {ECO:0000313|EMBL:GAO37669.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.
sulfate transporter
SCNpilot_BF_INOC_scaffold_101_416
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

423956..425101
DNA (1146bp) protein (382aa)
hypothetical protein id=12496265 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EGV50273.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (ve
hypothetical protein
SCNpilot_BF_INOC_scaffold_101_417
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(425128..425301)
DNA (174bp) protein (58aa)
CopG family transcriptional regulator id=12496264 bin=THIO_MID species=Burkholderia multivorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative ribbon-helix-helix protein, CobG family Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
putative CopG family protein
SCNpilot_BF_INOC_scaffold_101_418
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

425413..427041
DNA (1629bp) protein (543aa)
Sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulfate transporter; K03321 sulfate permease, SulP family id=12496263 bin=THIO_MID species=Pseudomonas nitroreducens genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulfate transporter
Sulfate transporter/antisigma-factor antagonist STAS:Xanthine/uracil/vitamin C permease:Sulphate transporter {ECO:0000313|EMBL:AAZ64330.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteoba
SCNpilot_BF_INOC_scaffold_101_419
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(427056..427691)
DNA (636bp) protein (212aa)
hypothetical protein id=12496262 bin=THIO_MID species=Nitrobacter sp. Nb-311A genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAQ35863.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-31
hypothetical protein
SCNpilot_BF_INOC_scaffold_101_420
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(427763..430117)
DNA (2355bp) protein (785aa)
von Willebrand factor type A id=12496261 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
von Willebrand factor type A {ECO:0000313|EMBL:ADG29542.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (
hypothetical protein
Displaying items 391-420 of 426 in total

View Taxonomy