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SCNpilot_BF_INOC_scaffold_11_54

Organism: SCNpilot_BF_INOC_Clostridium_37_18

near complete RP 48 / 55 MC: 5 BSCG 50 / 51 MC: 4 ASCG 14 / 38 MC: 4
Location: 59872..60357

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Clostridium thermocellum RepID=A3DFD9_CLOTH similarity UNIREF
DB: UNIREF100
  • Identity: 49.1
  • Coverage: 161.0
  • Bit_score: 166
  • Evalue 2.20e-38
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 49.1
  • Coverage: 161.0
  • Bit_score: 166
  • Evalue 6.10e-39
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABN52668.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clos similarity UNIPROT
DB: UniProtKB
  • Identity: 49.1
  • Coverage: 161.0
  • Bit_score: 166
  • Evalue 3.00e-38

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Taxonomy

Ruminiclostridium thermocellum → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 486
ATGAAATCAAAAGAATATACCAAACAGCTAGAAGAATACCTTTTAGAGAAAAGAAATGCGCATTTTCGATTGGCTTATAGCTATGTTAAAAATGATGAAGATGCTTGGGACATATTACAGGATGCAATAGTGAAGGCGTTAAGGGCGATTCACAAGCATCAATATCCAGAGTATATAAACAGCTGGTTTTATAGAATTTTAATCAACGCCTGTTTGGACTTTTTGCGAAAGAGGAAAAGGTTTATTTCGATAGAGGAAACTGATCTTGAAACCGCAATTGACCACTACCAAGACTTGGATTTGCAACAAGCACTTGATAATTTGCCGACAGAATTAAAGACGATAATCATTCTTAGATATTTCGAGGATCAAAAAATTGGTGATATTGCCAAAATACTTGATCTAAATGAAAATACGGTTAAGACAAAATTATACCGTAGCCTAAAGCTGCTAAGAATGGATCTTGAGGAGACAATTTATGAGTAA
PROTEIN sequence
Length: 162
MKSKEYTKQLEEYLLEKRNAHFRLAYSYVKNDEDAWDILQDAIVKALRAIHKHQYPEYINSWFYRILINACLDFLRKRKRFISIEETDLETAIDHYQDLDLQQALDNLPTELKTIIILRYFEDQKIGDIAKILDLNENTVKTKLYRSLKLLRMDLEETIYE*