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SCNpilot_BF_INOC_scaffold_60_88

Organism: SCNpilot_BF_INOC_Clostridium_37_18

near complete RP 48 / 55 MC: 5 BSCG 50 / 51 MC: 4 ASCG 14 / 38 MC: 4
Location: 90754..92247

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=293826 specie similarity UNIPROT
DB: UniProtKB
  • Identity: 57.5
  • Coverage: 497.0
  • Bit_score: 547
  • Evalue 2.50e-152
Transcription termination factor Rho n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TK35_ALKMQ similarity UNIREF
DB: UNIREF100
  • Identity: 57.5
  • Coverage: 497.0
  • Bit_score: 547
  • Evalue 1.80e-152
rho; transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 57.5
  • Coverage: 497.0
  • Bit_score: 547
  • Evalue 5.10e-153

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Taxonomy

Alkaliphilus metalliredigens → Alkaliphilus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1494
ATGGATATAAGAACACTTCAGAAGAAAAAAGTTGCTGATTTAAGAGAAATTGCAAAAGTAATGGGATTGGGTGGCTTTGAGAAACTGAAAAAGGACGAACTGATTGATCTCATCATTGGTGGAAATGCCCCTCAGGAGAATGACGATGAGCCTTTTGTTTATGAGCCAGAGATTGAAGATGACACAACAGAGGATGAGGATACATCTGAGGATGAAGAAGGTTTAGAGGCGGCTTCAAGTGAAGAGGGGATTTATAATAGTGATGTTAACCCTTTAGTAGTTGACAGCTCAAAGGTCGCTGAAATAACAGAGGAAAGTATAAAATATGAAGGCCAGGTAGCGGAAGCGACTAGGGAGCAAAAGCGTGTCTATAATCACAAAGAGGGTGCTGTCGAGGAGGTTGAGGGCGTTCTAGAAATCACAGAGCAAGGATATGGCTTTATGAGGTTTGAAAACTTTTTAACCAGCGATCAGGATGTATATGTTTCCAACTCACAAATAAGAAAGTTTTCAATGAGAACTGGTGACAAAATCCTTGGATCAACGCGTGAGCCAAATCCGGGGGAGCGTTTCAGAGCCCTTTTATATGTAAAGTCCATTAACGGCATGCGTCCAATTTCAGGCTTTAGAAGACCACGATTTGACGATTTAACCCCTCTCTATCCAAATGAGCGCTTTAGACTGTCGGGTGACTATAAAGATCATGCCATGCGAATTATCGATATTGTTTCACCGATTGGGAAGGGTCAAAGAGGCTTGATCGTTGCACCACCCAAATCAGGAAAAACGATTTTACTTCAAAAAATTGCTAAGGCGATTACAAAAAATCATCCTGAGGTGGAGTTAATTGTGCTTCTAATTGATGAACGTCCTGAAGAAGTAACGGATATGAAGCGATCAATCAATGCAGATGTTATCTACAGTACCTTTGATGAGCTACCTTCTCATCACGTTAAGGTCGCCGAGATGGTGCTTCATAGAGCAAAGGCTTTGGTAGAACAGAAGAAGGATGTCGTTATTTTACTTGATAGCATCACGCGGCTTGCAAGAGCCTATAACCTCGTTATGCCATCAAGTGGCAAAACACTTTCTGGTGGACTTGATCCAAATGCGTTACATCGACCGAAGCGATTTTTTGGTGCGGCAAGGAACATAGAGGAGGGTGGTTCTCTTACAATACTTGCAACTGCACTAGTTGAGACAGGTTCTAGAATGGACGATGTTATTTTCGAGGAGTTTAAGGGAACTGGAAATATGGAGTTAATTCTCGATCGCAAATTATCAGAGAAGCGTATTTTTCCTTCTATTGATATACGAAAATCTGGGACGCGAAGAGAAGAGTTTATTTTAGATACTGAAGAGCTTGAAGGTATTTGGCGAATCAGAAGAAATCTCGATCGCTACAATAACTCAGAAATCGTTGAGAAATTTATTGATACCTTGTTATCCACAAAAGACAACCATAGCTTTTTTCAAATCCTTGCAAAGGAATAA
PROTEIN sequence
Length: 498
MDIRTLQKKKVADLREIAKVMGLGGFEKLKKDELIDLIIGGNAPQENDDEPFVYEPEIEDDTTEDEDTSEDEEGLEAASSEEGIYNSDVNPLVVDSSKVAEITEESIKYEGQVAEATREQKRVYNHKEGAVEEVEGVLEITEQGYGFMRFENFLTSDQDVYVSNSQIRKFSMRTGDKILGSTREPNPGERFRALLYVKSINGMRPISGFRRPRFDDLTPLYPNERFRLSGDYKDHAMRIIDIVSPIGKGQRGLIVAPPKSGKTILLQKIAKAITKNHPEVELIVLLIDERPEEVTDMKRSINADVIYSTFDELPSHHVKVAEMVLHRAKALVEQKKDVVILLDSITRLARAYNLVMPSSGKTLSGGLDPNALHRPKRFFGAARNIEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRKLSEKRIFPSIDIRKSGTRREEFILDTEELEGIWRIRRNLDRYNNSEIVEKFIDTLLSTKDNHSFFQILAKE*