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SCNpilot_BF_INOC_scaffold_56

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Displaying items 1-30 of 268 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_56_1
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..1974)
DNA (1974bp) protein (658aa)
PKD domain containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIM9_FLUTR
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:AEA45991.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="F
SCNpilot_BF_INOC_scaffold_56_2
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1993..2415)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIN0_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45992.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviic
SCNpilot_BF_INOC_scaffold_56_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(2423..2848)
DNA (426bp) protein (142aa)
id=4534881 Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_BF_INOC_scaffold_56_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3003..5036)
DNA (2034bp) protein (678aa)
Peptidase family M3 {ECO:0000313|EMBL:EFK57030.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFK57030.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae;
Zn-dependent oligopeptidase (EC:3.4.15.5)
Peptidase family M3 n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTC9_9SPHI
SCNpilot_BF_INOC_scaffold_56_5
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5149..6315)
DNA (1167bp) protein (389aa)
ATPase n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DC72_9BACT
ATPase {ECO:0000313|EMBL:EOZ96797.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
putative AAA family ATPase
SCNpilot_BF_INOC_scaffold_56_6
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6634..7815
DNA (1182bp) protein (394aa)
Major facilitator superfamily MFS_1 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GNT5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ22282.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V4
Arabinose efflux permease
SCNpilot_BF_INOC_scaffold_56_7
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7850..9904)
DNA (2055bp) protein (685aa)
Thiol:disulfide interchange protein DsbD n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SNJ8_9FLAO
cytochrome c biogenesis protein, transmembrane region Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
thiol:disulfide interchange protein
SCNpilot_BF_INOC_scaffold_56_8
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(9904..10347)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE95_FLUTR
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_56_9
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10420..10698)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE96_FLUTR
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_56_10
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10814..11644)
DNA (831bp) protein (277aa)
Elongation factor Ts n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDR9_FLUTR
translation elongation factor Ts (EF-Ts)
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Fl
SCNpilot_BF_INOC_scaffold_56_11
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11667..12404)
DNA (738bp) protein (246aa)
30S ribosomal protein S2 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDR8_FLUTR
30S ribosomal protein S2P; K02967 small subunit ribosomal protein S2 Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
30S ribosomal protein S2
SCNpilot_BF_INOC_scaffold_56_12
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(12522..12908)
DNA (387bp) protein (129aa)
30S ribosomal protein S9 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDR7_FLUTR
30S ribosomal protein S9
30S ribosomal protein S9P; K02996 small subunit ribosomal protein S9 Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_BF_INOC_scaffold_56_13
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


comp(12911..13366)
DNA (456bp) protein (152aa)
50S ribosomal protein L13 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDR6_FLUTR
50S ribosomal protein L13P; K02871 large subunit ribosomal protein L13 Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
50S ribosomal protein L13
SCNpilot_BF_INOC_scaffold_56_14
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13477..13893)
DNA (417bp) protein (139aa)
cytochrome C oxidase subunit II n=1 Tax=Empedobacter brevis RepID=UPI000374851F
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADX68590.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella viros
SCNpilot_BF_INOC_scaffold_56_15
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(14154..14927)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase; K13766 methylglutaconyl-CoA hydratase [EC:4.2.1.18] Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
Enoyl-CoA hydratase/isomerase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID57_FLUTR
enoyl-CoA hydratase
SCNpilot_BF_INOC_scaffold_56_16
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15003..15674)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YAA5_9SPHI
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
two component transcriptional regulator, LuxR family
SCNpilot_BF_INOC_scaffold_56_17
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15684..16484)
DNA (801bp) protein (267aa)
histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B63122
putative signal transduction histidine kinase Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_BF_INOC_scaffold_56_18
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16484..17128)
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YAA7_9SPHI
Putative uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_BF_INOC_scaffold_56_19
unknown

Not on your lists

comp(17140..17652)
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_56_20
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18015..18317
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4XT58_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC20155.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloro
SCNpilot_BF_INOC_scaffold_56_21
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18408..19985)
DNA (1578bp) protein (526aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHI8_FLUTR
drug resistance transporter, EmrB/QacA subfamily
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AEA43753.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="F
SCNpilot_BF_INOC_scaffold_56_22
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19991..21073)
DNA (1083bp) protein (361aa)
Secretion protein HlyD family protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHI9_FLUTR
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:AEA43754.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" s
SCNpilot_BF_INOC_scaffold_56_23
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21114..22376)
DNA (1263bp) protein (421aa)
Outer membrane efflux protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHJ0_FLUTR
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AEA43755.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="F
SCNpilot_BF_INOC_scaffold_56_24
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22369..22986)
DNA (618bp) protein (206aa)
Transcriptional regulator, TetR family n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHJ1_FLUTR
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AEA43756.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola
SCNpilot_BF_INOC_scaffold_56_25
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23499..24152)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE02_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45566.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviic
SCNpilot_BF_INOC_scaffold_56_26
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24149..25369)
DNA (1221bp) protein (407aa)
Uncharacterized conserved protein UCP033563 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE01_FLUTR
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_56_27
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25511..26467)
DNA (957bp) protein (319aa)
phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
phosphoglycerate dehydrogenase (EC:1.1.1.95)
Phosphoglycerate dehydrogenase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE00_FLUTR
SCNpilot_BF_INOC_scaffold_56_28
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26469..27536)
DNA (1068bp) protein (356aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IDZ9_FLUTR
SCNpilot_BF_INOC_scaffold_56_29
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27663..29807)
DNA (2145bp) protein (715aa)
PKD domain containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2II11_FLUTR
PKD domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
PKD domain-containing protein
SCNpilot_BF_INOC_scaffold_56_30
unknown

Not on your lists

29871..29978
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying items 1-30 of 268 in total

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