ggKbase home page

SCNpilot_BF_INOC_scaffold_125_188

Organism: SCNpilot_BF_INOC_Bacteroidetes_37_82

near complete RP 52 / 55 BSCG 49 / 51 ASCG 14 / 38
Location: 218425..219144

Top 3 Functional Annotations

Value Algorithm Source
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 43.4
  • Coverage: 235.0
  • Bit_score: 202
  • Evalue 7.40e-49
Pseudouridine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT0_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 44.3
  • Coverage: 237.0
  • Bit_score: 201
  • Evalue 1.20e-48
pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 44.3
  • Coverage: 237.0
  • Bit_score: 201
  • Evalue 3.30e-49

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFOXYD2_FULL_Sphingobacteria_35_12_curated → Sphingobacteria → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 720
ATGAGCCAGATACCAATAATTTTTGAAGACGAATATTTAGTAATTGCCAATAAACCAAGCGGCATTGCAAGTATTCCCGAGCGCAACGGAAGCAGAGAAAACTCTTTTGTGGGAATGCTCGAAAGCCAAATAGGGCAACTGTTTGTGGTACACAGAATTGATAAGCAAACCAGTGGAATTTTATGTTTTGCAAAAACCGAAGATGTGCACAAAGCATTGAGTTTAATATTTGAAAACCGAGAAGTAGAAAAAGAATATTTCGCGGTGGTGAAAGGAAATGTGCTTGAGCCACACGGCATTATCAATGAGCCTTTGGCAGAAAATCCTGCGCGTCCTGGAACCATGAAAGTGTATGCAAAAGGCAAAGAAGCAATTTCGGAATATTGGGTAAATGAAAATTTTAAACACGCTGCATGGCTTCGCGTAAAAATTTATACCGGAAGAATGCACCAAATTCGTGTGCATTTAAAATCTATCGGACATCCACTTTTGGTGGACGAAATTTATGCCGGAACTAAAAATTTTCATATTTCATCGGTGATGAAAAACTTTAAGCAAAACCTTGAGGAAGAAACTCGCCCAACCATTGCGCGAACTACACTTCACGCGGCAAAGCTTGGTTTTATTCACCCAATTACAAAGCAAAGTATTTCGGTAGAAGCACCATTGCCAAAAGATTTTGAAGTGCTGCTAAAATTGCTGCGCAAAAACAATCGTTAA
PROTEIN sequence
Length: 240
MSQIPIIFEDEYLVIANKPSGIASIPERNGSRENSFVGMLESQIGQLFVVHRIDKQTSGILCFAKTEDVHKALSLIFENREVEKEYFAVVKGNVLEPHGIINEPLAENPARPGTMKVYAKGKEAISEYWVNENFKHAAWLRVKIYTGRMHQIRVHLKSIGHPLLVDEIYAGTKNFHISSVMKNFKQNLEEETRPTIARTTLHAAKLGFIHPITKQSISVEAPLPKDFEVLLKLLRKNNR*