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SCNpilot_BF_INOC_scaffold_112

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Displaying items 1-30 of 260 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_112_1
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1..153)
DNA (153bp) protein (51aa)
tuf1; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=EFTU_JANMA
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacter
SCNpilot_BF_INOC_scaffold_112_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(321..2429)
DNA (2109bp) protein (703aa)
Elongation factor G n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH4_ALIDB
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
translation elongation factor G
SCNpilot_BF_INOC_scaffold_112_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2516..2989)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F7CDC
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. M
30S ribosomal protein S7
SCNpilot_BF_INOC_scaffold_112_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3146..3523)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=8 Tax=cellular organisms RepID=RS12_ACIET
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamon
SCNpilot_BF_INOC_scaffold_112_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3790..4602
DNA (813bp) protein (271aa)
Heme exporter protein CcmC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9Q6_NITMU
heme exporter protein CcmC; K02195 heme exporter protein C Tax=CG_Rhodocyc_01
heme exporter protein CcmC
SCNpilot_BF_INOC_scaffold_112_6
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4599..4739
DNA (141bp) protein (47aa)
heme exporter protein CcmD; K02196 heme exporter protein D Tax=CG_Rhodof_02
SCNpilot_BF_INOC_scaffold_112_7
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4743..5204
DNA (462bp) protein (154aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEY0_NITSI
Cytochrome c-type biogenesis protein ccmE
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959};
SCNpilot_BF_INOC_scaffold_112_8
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5201..7222
DNA (2022bp) protein (674aa)
Cytochrome c heme lyase subunit CcmF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI48_9PROT
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AKH38251.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomo
cytochrome c-type biogenesis protein CcmF
SCNpilot_BF_INOC_scaffold_112_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7219..7746
DNA (528bp) protein (176aa)
Periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK54_9BURK
periplasmic protein thiol--disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
periplasmic protein thiol--disulfide oxidoreductase DsbE
SCNpilot_BF_INOC_scaffold_112_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7739..8212
DNA (474bp) protein (158aa)
Cytochrome c-type biogenesis protein CcmH n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRB7_RUBGI
C-type cytochrome biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
ccmH; cytochrome c-type biogenesis protein CcmH
SCNpilot_BF_INOC_scaffold_112_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8212..9435
DNA (1224bp) protein (408aa)
Cytochrome c-type biogenesis protein CcmI n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CST3_SIDLE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Cytochrome C-type biogenesis protein CcmI
SCNpilot_BF_INOC_scaffold_112_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9435..10115
DNA (681bp) protein (227aa)
ccmA; cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
Heme exporter protein CcmA n=1 Tax=Marichromatium purpuratum 984 RepID=F9TWV7_MARPU
cytochrome C biogenesis protein CcmA
SCNpilot_BF_INOC_scaffold_112_13
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10112..10822
DNA (711bp) protein (237aa)
Heme exporter protein B n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKW5_AZOSU
heme exporter protein CcmB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain
SCNpilot_BF_INOC_scaffold_112_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10892..12055)
DNA (1164bp) protein (388aa)
penicillin-binding protein 6 (EC:3.4.16.4)
Penicillin-binding protein 6 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2Q1_ACISJ
Penicillin-binding protein 6 {ECO:0000313|EMBL:ABM40526.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source
SCNpilot_BF_INOC_scaffold_112_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12135..12764)
DNA (630bp) protein (210aa)
Putative transmembrane protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH0_ALIDB
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:AEB82776.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
SCNpilot_BF_INOC_scaffold_112_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12828..13175)
DNA (348bp) protein (116aa)
Ferredoxin-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG9_ALIDB
ferredoxin-like protein
Ferredoxin-like protein {ECO:0000313|EMBL:AEB82775.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
SCNpilot_BF_INOC_scaffold_112_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13194..13622)
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1W2P7_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM40522.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain
SCNpilot_BF_INOC_scaffold_112_18
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13915..16269)
DNA (2355bp) protein (785aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCY2_ACISJ
hypothetical protein Tax=GWA2_Burkholderiales_64_37_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_112_19
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16349..17302)
DNA (954bp) protein (318aa)
Protein-export membrane protein SecF n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHS2_ACIET
secF; preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovor
SCNpilot_BF_INOC_scaffold_112_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17320..19221)
DNA (1902bp) protein (634aa)
preprotein translocase subunit SecD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003698377
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
protein-export membrane protein secd
SCNpilot_BF_INOC_scaffold_112_21
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19271..19606)
DNA (336bp) protein (112aa)
Preprotein translocase, YajC subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8N6_ACIDE
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EER59160.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
preprotein translocase subunit YajC
SCNpilot_BF_INOC_scaffold_112_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19778..23395)
DNA (3618bp) protein (1206aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
Pyruvate ferredoxin/flavodoxin oxidoreductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCY7_ACISJ
Pyruvate ferredoxin/flavodoxin oxidoreductase {ECO:0000313|EMBL:ABM44112.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="
SCNpilot_BF_INOC_scaffold_112_23
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23497..24243)
DNA (747bp) protein (249aa)
Nucleotidyl transferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCT9_ACISJ
nucleotidyl transferase
Nucleotidyl transferase {ECO:0000313|EMBL:ABM44064.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain
SCNpilot_BF_INOC_scaffold_112_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24332..25714
DNA (1383bp) protein (461aa)
proline aminopeptidase P II n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003689FE5
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:GAD23352.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;
peptidase m24b x-pro dipeptidase/aminopeptidase domain-containing protein
SCNpilot_BF_INOC_scaffold_112_25
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25884..26246
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07KD2_RHOP5
Periplasmic lipoprotein involved in iron transport {ECO:0000313|EMBL:KJV27123.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" sou
hypothetical protein
SCNpilot_BF_INOC_scaffold_112_26
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26369..26953
DNA (585bp) protein (195aa)
Ferrous iron transport protein n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J0Y6_PSEUL
ferrous iron transport protein
Ferrous iron transport protein {ECO:0000313|EMBL:BAK78477.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudo
SCNpilot_BF_INOC_scaffold_112_27
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26988..27368
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037665CF
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK78476.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseu
SCNpilot_BF_INOC_scaffold_112_28
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27380..28225
DNA (846bp) protein (282aa)
FTR1 family iron permease n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1AW65_9NEIS
FTR1 family iron permease {ECO:0000313|EMBL:KJH69051.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium v
hypothetical protein
SCNpilot_BF_INOC_scaffold_112_29
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28222..29655
DNA (1434bp) protein (478aa)
Putative nitrogen fixation protein VnfA n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9YYL9_9NEIS
Putative nitrogen fixation protein VnfA {ECO:0000313|EMBL:EEG10222.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" sourc
vnfA; putative nitrogen fixation protein VnfA
SCNpilot_BF_INOC_scaffold_112_30
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29687..30454)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PQL7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB04940.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa
Displaying items 1-30 of 260 in total

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