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SCNpilot_BF_INOC_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_139_1
unknown

Not on your lists

65..565
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_139_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

724..1386
DNA (663bp) protein (221aa)
Transposase IS66 n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MG70_ACIET
Transposase IS66 {ECO:0000313|EMBL:GAO26158.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
transposase is66
SCNpilot_BF_INOC_scaffold_139_3
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2341..4260)
DNA (1920bp) protein (640aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W952_ACISJ
ppic-type peptidyl-prolyl cis-trans isomerase
SCNpilot_BF_INOC_scaffold_139_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4418..4690)
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein n=2 Tax=Acidovorax RepID=A1W953_ACISJ
Histone family protein DNA-binding protein {ECO:0000313|EMBL:GAO24016.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source
histone family protein DNA-binding protein
SCNpilot_BF_INOC_scaffold_139_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4928..5494)
DNA (567bp) protein (189aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:ABM32252.1}; EC=2.7.8.5 {ECO:0000313|EMBL:ABM32252.1};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteob
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TMR4_ACIAC
SCNpilot_BF_INOC_scaffold_139_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5552..6469)
DNA (918bp) protein (306aa)
Band 7 protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTE7_ALIDB
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ADV00421.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrifican
SCNpilot_BF_INOC_scaffold_139_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6487..6951)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1W9H9_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85391.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
SCNpilot_BF_INOC_scaffold_139_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7103..9379
DNA (2277bp) protein (759aa)
ornithine decarboxylase (EC:4.1.1.17)
lysine decarboxylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003705A7E
Ornithine decarboxylase {ECO:0000313|EMBL:GAD21439.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
SCNpilot_BF_INOC_scaffold_139_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9594..11513
DNA (1920bp) protein (640aa)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Acidovorax sp. (strain JS42) RepID=SYT_ACISJ
SCNpilot_BF_INOC_scaffold_139_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11670..12206
DNA (537bp) protein (179aa)
Translation initiation factor IF-3 n=2 Tax=Alicycliphilus denitrificans RepID=F4G433_ALIDK
translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae
SCNpilot_BF_INOC_scaffold_139_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12377..12580
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=2 Tax=Acidovorax RepID=RL35_ACIET
rpmI; 50S ribosomal protein l35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (
SCNpilot_BF_INOC_scaffold_139_12
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12607..12966
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QD51_ACIAP
50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovo
SCNpilot_BF_INOC_scaffold_139_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13058..14143
DNA (1086bp) protein (362aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TR07_ALIDB
phenylalanyl-tRNA synthetase subunit alpha
SCNpilot_BF_INOC_scaffold_139_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14262..16685
DNA (2424bp) protein (808aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035EB222
phenylalanyl-tRNA synthetase subunit beta
SCNpilot_BF_INOC_scaffold_139_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16682..17020
DNA (339bp) protein (113aa)
Integration host factor subunit alpha n=2 Tax=Alicycliphilus denitrificans RepID=E8TR05_ALIDB
integration host factor subunit alpha
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1603291 species="Bacteria; Proteobacte
SCNpilot_BF_INOC_scaffold_139_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17107..17502
DNA (396bp) protein (132aa)
Transcriptional regulator, MerR family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8H9_ACISJ
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABM42554.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
SCNpilot_BF_INOC_scaffold_139_17
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17806..20520
DNA (2715bp) protein (905aa)
Magnesium-importing ATPase n=2 Tax=Pseudomonas protegens RepID=Q4K9A8_PSEF5
magnesium-transporting ATPase
Magnesium-transporting ATPase {ECO:0000313|EMBL:AKA23557.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
SCNpilot_BF_INOC_scaffold_139_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20577..21143
DNA (567bp) protein (189aa)
Polyhydroxyalkanoate synthesis repressor PhaR n=2 Tax=Alicycliphilus denitrificans RepID=E8TRI0_ALIDB
polyhydroxyalkanoate synthesis repressor phar
Polyhydroxyalkonate synthesis repressor PhaR {ECO:0000313|EMBL:GAO27217.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" sour
SCNpilot_BF_INOC_scaffold_139_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21257..23401
DNA (2145bp) protein (715aa)
Generic methyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WJF8_9GAMM
Generic methyltransferase {ECO:0000313|EMBL:EIL99599.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
hypothetical protein
SCNpilot_BF_INOC_scaffold_139_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23480..24472
DNA (993bp) protein (331aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6V9_ALIDK
peptidoglycan-binding domain-containing protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:AEB86571.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliph
SCNpilot_BF_INOC_scaffold_139_21

Not on your lists

24568..25647
DNA (1080bp) protein (360aa)
ADP-ribosylation/Crystallin J1 {ECO:0000313|EMBL:EQD57243.1}; EC=3.2.2.19 {ECO:0000313|EMBL:EQD57243.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="m
ADP-ribosylation/Crystallin J1 n=1 Tax=mine drainage metagenome RepID=T1AL83_9ZZZZ
hypothetical protein
SCNpilot_BF_INOC_scaffold_139_22
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25665..26360
DNA (696bp) protein (232aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AI51_NITEC
oxidoreductase FAD/NAD(P)-binding subunit
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ABI58981.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;"
SCNpilot_BF_INOC_scaffold_139_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26398..26886)
DNA (489bp) protein (163aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRH1_ALIDB
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {E
SCNpilot_BF_INOC_scaffold_139_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26883..27578)
DNA (696bp) protein (232aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=1266330 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_BF_INOC_scaffold_139_25
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27571..29898)
DNA (2328bp) protein (776aa)
Candidate Carbon monoxide dehydrogenase large chain n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y392_RAMTT
carbon monoxide dehydrogenase large chain
Candidate Carbon monoxide dehydrogenase large chain {ECO:0000313|EMBL:AEG91179.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" s
SCNpilot_BF_INOC_scaffold_139_26
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30024..30377)
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:KJA10800.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_BF_INOC_scaffold_139_27
unknown

Not on your lists

comp(30415..30696)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_139_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30723..34358
DNA (3636bp) protein (1212aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=596154 species="Bacteria; Pr
Transcription-repair-coupling factor n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDB8_ALIDK
transcription-repair coupling factor
SCNpilot_BF_INOC_scaffold_139_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34550..35335
DNA (786bp) protein (262aa)
Lipoprotein, YaeC family n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC6_ALIDB
lipoprotein, yaec family
Lipoprotein, YaeC family {ECO:0000313|EMBL:AEB83626.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source
SCNpilot_BF_INOC_scaffold_139_30
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35372..36292)
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MI47_ACIET
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACM32979.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
Displaying items 1-30 of 98 in total

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