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SCNpilot_BF_INOC_scaffold_25_91

Organism: SCNpilot_BF_INOC_Xanthomonadales_64_24

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 100356..100925

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Y9_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 63.4
  • Coverage: 172.0
  • Bit_score: 209
  • Evalue 3.40e-51
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EIL95230.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s similarity UNIPROT
DB: UniProtKB
  • Identity: 63.4
  • Coverage: 172.0
  • Bit_score: 209
  • Evalue 4.80e-51
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 40.5
  • Coverage: 173.0
  • Bit_score: 121
  • Evalue 3.40e-25

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
GTGGCGGAGGAAGCGCTGATGGATGACGCGGCACAACCGGCCAATCCGGCAACGATACCGCTCGATACCGATACCCTGTTCAGCCAGGTTTACGATCGGCTGAAGGGGATGGCCGGCAAGCGCCTGTCCGGGGGTGTCCACGGCACCCTCGACACGACCGCGCTGGTTCACGATTTGTATTTGCGCATGGGCAGCAACCGCGAGCTCGGCTTTGCCCATGCAAACCAGTTTTTCGCCTACGCCGCGCGCGCCATGCGCCACCTGCTCGCAGATCGGGCGCGTGATCGCCTGCGCCTGCGTGCCGGCGGCGACTGGTTGCGCACGACGCTGACCGGCAGCGACTATCGACTGGCCATCGACAGCGCCGAGCAGGCCCTCGCCGTGGAGGCCGCCTTGCAGGCCTTGTCCGAGGTGGACGCGCGCGCCGCCCAGGTCGTCGAACTGACCTGGTTCGCCGGCCTGGGCCAGGAACAGATCGGCGAAACACTCGGCGTCGCGCGCAGCACGATCGCCCGTGACTGGCGGTTCGCCCGCGCCTTCCTCAAGCAGCAGCTCGATGACACGCGCTGA
PROTEIN sequence
Length: 190
VAEEALMDDAAQPANPATIPLDTDTLFSQVYDRLKGMAGKRLSGGVHGTLDTTALVHDLYLRMGSNRELGFAHANQFFAYAARAMRHLLADRARDRLRLRAGGDWLRTTLTGSDYRLAIDSAEQALAVEAALQALSEVDARAAQVVELTWFAGLGQEQIGETLGVARSTIARDWRFARAFLKQQLDDTR*