ggKbase home page

SCNpilot_BF_INOC_scaffold_490

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_490_1
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..837)
-----------------
DNA (837bp)
protein (279aa)
Putative uncharacterized protein n=2 Tax=Dysgonomonas RepID=F8X3U9_9PORP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGK05238.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22
SCNpilot_BF_INOC_scaffold_490_2
unknown

Not on your lists

1068..1577
-----------------
DNA (510bp)
protein (170aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_490_3
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1590..3425
-----------------
DNA (1836bp)
protein (612aa)
MAC/Perforin domain protein id=4674540 bin=GWF2_Bacteroidetes_49_14 species=Moorea producens genus=Moorea taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
Membrane attack complex component/perforin (MACPF) domain protein Tax=GWF2_Bacteroidetes_49_14_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_490_4
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3577..4164
-----------------
DNA (588bp)
protein (196aa)
Uncharacterized protein id=3928785 bin=GWC2_Bacteroidetes_46_850 species=Porphyromonas sp. oral taxon 279 genus=Porphyromonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein Tax=GWC2_Bacteroidetes_46_850_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_490_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4284..4898)
-----------------
DNA (615bp)
protein (205aa)
Regulatory protein TetR n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4H5_PALPW
regulatory protein tetr
Regulatory protein TetR {ECO:0000313|EMBL:ADQ79619.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
SCNpilot_BF_INOC_scaffold_490_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4947..5711)
-----------------
DNA (765bp)
protein (255aa)
Patatin n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7P0_PALPW
patatin
Patatin {ECO:0000313|EMBL:ADQ80734.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 1
SCNpilot_BF_INOC_scaffold_490_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5727..6401)
-----------------
DNA (675bp)
protein (225aa)
Response regulator receiver protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N9_PALPW
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADQ80733.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter p
SCNpilot_BF_INOC_scaffold_490_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6785..7909
-----------------
DNA (1125bp)
protein (375aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N8_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80732.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
SCNpilot_BF_INOC_scaffold_490_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(7901..9262)
-----------------
DNA (1362bp)
protein (454aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
Histidine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N5_PALPW
SCNpilot_BF_INOC_scaffold_490_10
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(9365..9634)
-----------------
DNA (270bp)
protein (90aa)
30S ribosomal protein S15 n=1 Tax=Tannerella sp. CAG:118 RepID=R5IIL0_9PORP
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella;
30S ribosomal protein S15
SCNpilot_BF_INOC_scaffold_490_11
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9819..10487)
-----------------
DNA (669bp)
protein (223aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N1_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80725.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
SCNpilot_BF_INOC_scaffold_490_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10577..11281)
-----------------
DNA (705bp)
protein (235aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T575_PALPW
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADQ79869.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.
SCNpilot_BF_INOC_scaffold_490_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11274..12815)
-----------------
DNA (1542bp)
protein (514aa)
integral membrane sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=CG_Paludi_01
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T576_PALPW
integral membrane sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_490_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13051..14256
-----------------
DNA (1206bp)
protein (402aa)
Major facilitator superfamily MFS_1 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5B6_PALPW
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADQ79910.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter p
SCNpilot_BF_INOC_scaffold_490_15
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14423..17521
-----------------
DNA (3099bp)
protein (1033aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154};
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0W2_PALPW
SCNpilot_BF_INOC_scaffold_490_16
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(17616..18089)
-----------------
DNA (474bp)
protein (158aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035DF294
Uncharacterized protein Tax=RBG_16_Caldithrix_48_16_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_490_17
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18148..18642)
-----------------
DNA (495bp)
protein (165aa)
Thioredoxin n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4M1_PALPW
thioredoxin Tax=CG_Paludi_01
thioredoxin
SCNpilot_BF_INOC_scaffold_490_18
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18665..18874)
-----------------
DNA (210bp)
protein (70aa)
Tax=CG_Paludi_01
SCNpilot_BF_INOC_scaffold_490_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18867..19097)
-----------------
DNA (231bp)
protein (77aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4M0_PALPW
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
SCNpilot_BF_INOC_scaffold_490_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19106..19399)
-----------------
DNA (294bp)
protein (98aa)
Regulatory protein ArsR n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4L9_PALPW
regulatory protein arsr
Regulatory protein ArsR {ECO:0000313|EMBL:ADQ79663.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
SCNpilot_BF_INOC_scaffold_490_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19642..20343
-----------------
DNA (702bp)
protein (234aa)
DNA repair protein RadC n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6J8_PALPW
DNA repair protein radc
DNA repair protein RadC {ECO:0000313|EMBL:ADQ80342.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
SCNpilot_BF_INOC_scaffold_490_22
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20574..21488
-----------------
DNA (915bp)
protein (305aa)
ABC transporter related protein; K01990 ABC-2 type transport system ATP-binding protein Tax=CG_Paludi_01
ABC transporter related protein id=1943622 bin=GWE2_Bacteroidetes_32_14 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
ABC transporter ATP-binding protein
SCNpilot_BF_INOC_scaffold_490_23
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21529..22806
-----------------
DNA (1278bp)
protein (426aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IVE8_9PORP
ABC transporter permease; K01992 ABC-2 type transport system permease protein Tax=CG_Paludi_01
ABC transporter permease
SCNpilot_BF_INOC_scaffold_490_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22843..23736
-----------------
DNA (894bp)
protein (298aa)
Peptidase U61 LD-carboxypeptidase A n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6J5_PALPW
peptidase u61 ld-carboxypeptidase a
Peptidase U61 LD-carboxypeptidase A {ECO:0000313|EMBL:ADQ80339.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter p
SCNpilot_BF_INOC_scaffold_490_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23729..24451)
-----------------
DNA (723bp)
protein (241aa)
DNA repair protein RecO n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6J3_PALPW
DNA repair protein reco
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=694427 species="Bacteria; Bacteroidetes; Bact
SCNpilot_BF_INOC_scaffold_490_26
Porphyromonadaceae bacterium COT-184 OH4590, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


24684..24938
-----------------
DNA (255bp)
protein (85aa)
30S ribosomal protein S20 n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JF55_9BACT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1517682 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="
30S ribosomal protein s20
SCNpilot_BF_INOC_scaffold_490_27
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25084..25872)
-----------------
DNA (789bp)
protein (263aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1M3_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78617.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigen
SCNpilot_BF_INOC_scaffold_490_28
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25919..26788)
-----------------
DNA (870bp)
protein (290aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z5_PALPW
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
SCNpilot_BF_INOC_scaffold_490_29
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26861..27529)
-----------------
DNA (669bp)
protein (223aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z4_PALPW
uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase
SCNpilot_BF_INOC_scaffold_490_30
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27530..28438)
-----------------
DNA (909bp)
protein (303aa)
hypothetical protein n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237D5A3
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
Displaying items 1-30 of 39 in total

View Taxonomy