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SCNpilot_BF_INOC_scaffold_458

Search features with annotation key words

Displaying items 61-90 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_458_61
unknown

Not on your lists

comp(65661..65999)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_458_62
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66365..67447)
DNA (1083bp) protein (361aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1097677 species="Bacteri
3-dehydroquinate synthase n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B9B4_9MICO
SCNpilot_BF_INOC_scaffold_458_63
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67444..67956)
DNA (513bp) protein (171aa)
aroK; shikimate kinase I; K00891 shikimate kinase [EC:2.7.1.71] id=7722121 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1177594 species="Bacteria; Actinobacteria; Microc
shikimate kinase
SCNpilot_BF_INOC_scaffold_458_64
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67953..69164)
DNA (1212bp) protein (404aa)
aroC; chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] id=7722120 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
chorismate synthase
SCNpilot_BF_INOC_scaffold_458_65
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(69161..69982)
DNA (822bp) protein (274aa)
Shikimate 5-dehydrogenase n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P727_LEIXC
shikimate 5-dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AGW41264.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 4630
SCNpilot_BF_INOC_scaffold_458_66
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(69975..71216)
DNA (1242bp) protein (414aa)
periplasmic solute-binding protein; K07082 UPF0755 protein id=7722118 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR24432.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_458_67
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(71206..71679)
DNA (474bp) protein (158aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1348253 speci
Holliday junction resolvase n=1 Tax=Microbacterium yannicii RepID=UPI0002E082F4
endonuclease
SCNpilot_BF_INOC_scaffold_458_68
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(71679..74336)
DNA (2658bp) protein (886aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=7722116 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
SCNpilot_BF_INOC_scaffold_458_69
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(74404..74634)
DNA (231bp) protein (77aa)
hypothetical protein id=7722115 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EPR76037.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_458_70
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(74746..76413)
DNA (1668bp) protein (556aa)
ptsA; phosphoenolpyruvate--protein phosphatase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732, ECO:0000313|EMBL:CAN01007.1};; Phosphotransferase system, enzyme I {ECO:00002
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CPK8_CLAM3
SCNpilot_BF_INOC_scaffold_458_71
Streptomycetaceae bacterium MP113-05, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(76410..76712)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6KM69_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EST33167.1}; TaxID=1380770 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae.;" source="Streptomycetaceae bacterium MP113-05.;"
PTS system phosphocarrier protein HPr
SCNpilot_BF_INOC_scaffold_458_72
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(76722..78194)
DNA (1473bp) protein (491aa)
gbsA; betaine aldehyde dehydrogenase; K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8] Tax=RBG_16_RIF_CHLX_70_13_curated
Uncharacterized protein n=1 Tax=Treponema denticola AL-2 RepID=M2DH92_TREDN
betaine-aldehyde dehydrogenase
SCNpilot_BF_INOC_scaffold_458_73
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(78194..78955)
DNA (762bp) protein (254aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ADK80748.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ADK80748.1};; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;"
fructose-bisphosphate aldolase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI000262832C
SCNpilot_BF_INOC_scaffold_458_74
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(79028..80086)
DNA (1059bp) protein (353aa)
sorbitol dehydrogenase; K00008 L-iditol 2-dehydrogenase [EC:1.1.1.14] Tax=RBG_16_RIF_CHLX_70_13_curated
sorbitol dehydrogenase n=1 Tax=Blautia producta RepID=UPI0003781078
sorbitol dehydrogenase
SCNpilot_BF_INOC_scaffold_458_75
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(80102..81085)
DNA (984bp) protein (328aa)
hypothetical protein Tax=RBG_16_RIF_CHLX_70_13_curated
SCNpilot_BF_INOC_scaffold_458_76
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(81088..82080)
DNA (993bp) protein (331aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KRD8_9THEO
hypothetical protein; K02796 PTS system, mannose-specific IID component Tax=RBG_16_RIF_CHLX_70_13_curated
PTS system mannose/fructose/sorbose family IID component
SCNpilot_BF_INOC_scaffold_458_77
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(82077..83096)
DNA (1020bp) protein (340aa)
PTS system mannose-specific enzyme IIC compoent n=1 Tax=Centipeda periodontii DSM 2778 RepID=F5RQS3_9FIRM
PTS system transporter subunit IIC; K02795 PTS system, mannose-specific IIC component Tax=RBG_16_RIF_CHLX_70_13_curated
PTS sorbose-specific transporter subunit IIC
SCNpilot_BF_INOC_scaffold_458_78
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(83093..83587)
DNA (495bp) protein (165aa)
Protein-N(pi)-phosphohistidine--sugarphosphotransferase; K02794 PTS system, mannose-specific IIB component [EC:2.7.1.69] Tax=RBG_16_RIF_CHLX_70_13_curated
Protein-N(pi)-phosphohistidine--sugarphosphotransferase (EC:2.7.1.69)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KRN2_9THEO
SCNpilot_BF_INOC_scaffold_458_79
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(83617..84039)
DNA (423bp) protein (141aa)
Putative PTS system IIA component n=1 Tax=Acetonema longum DSM 6540 RepID=F7NLJ7_9FIRM
Putative PTS system IIA component {ECO:0000313|EMBL:EGO63092.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM
Pts system mannose-specific eiiab component
SCNpilot_BF_INOC_scaffold_458_80
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

84271..85077
DNA (807bp) protein (269aa)
Transcriptional regulator, DeoR family n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI40_RHOMR
putative SorC family transcriptional regulator Tax=RBG_16_RIF_CHLX_70_13_curated
DeoR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_458_81
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(85126..85776)
DNA (651bp) protein (217aa)
30S ribosomal protein S4 n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B50A18
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
30S ribosomal protein S4 rbh
SCNpilot_BF_INOC_scaffold_458_82
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85834..87219)
DNA (1386bp) protein (462aa)
recombination factor protein RarA; K07478 putative ATPase id=7722111 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Putative replication-associated recombination protein A {ECO:0000313|EMBL:ERK72160.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia
recombination factor protein RarA
SCNpilot_BF_INOC_scaffold_458_83
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87341..88141
DNA (801bp) protein (267aa)
peptidyl-prolyl cis-trans isomerase; K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] id=7722110 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Putative peptidyl-prolyl cis-trans isomerase B {ECO:0000313|EMBL:EPR76041.1}; EC=5.2.1.8 {ECO:0000313|EMBL:EPR76041.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriace
peptidyl-prolyl cis-trans isomerase B
SCNpilot_BF_INOC_scaffold_458_84
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

88196..89425
DNA (1230bp) protein (410aa)
ATPase n=1 Tax=Humibacter albus RepID=UPI0003B65D54
ATPase {ECO:0000313|EMBL:KDP90004.1}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_458_85
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

89513..90055
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJW5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EAR24441.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_458_86
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(90042..92291)
DNA (2250bp) protein (750aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] id=7722107 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
GTP pyrophosphokinase {ECO:0000313|EMBL:CCE75731.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CCE75731.1};; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source
relA; GTP pyrophosphokinase (EC:2.7.6.5)
SCNpilot_BF_INOC_scaffold_458_87
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(92345..93364)
DNA (1020bp) protein (340aa)
preprotein translocase subunit SecF n=1 Tax=Glaciibacter superstes RepID=UPI0003B484A4
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
secF; preprotein translocase subunit SecF
SCNpilot_BF_INOC_scaffold_458_88
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(93364..95118)
DNA (1755bp) protein (585aa)
preprotein translocase subunit SecD n=1 Tax=Agromyces subbeticus RepID=UPI0003B3D762
preprotein translocase subunit SecD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
SCNpilot_BF_INOC_scaffold_458_89
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(95122..95556)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003808735
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN01868.1}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiga
SCNpilot_BF_INOC_scaffold_458_90
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(95634..96674)
DNA (1041bp) protein (347aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Mic
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RTP6_LEIAQ
Holliday junction DNA helicase RuvB
Displaying items 61-90 of 108 in total

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