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SCNpilot_BF_INOC_scaffold_512_24

Organism: SCNpilot_BF_INOC_Leifsonia_70_13

near complete RP 47 / 55 MC: 1 BSCG 45 / 51 ASCG 9 / 38
Location: comp(22014..22643)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit id=7719371 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 65.1
  • Coverage: 169.0
  • Bit_score: 216
  • Evalue 2.40e-53
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:EPR75909.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.1
  • Coverage: 167.0
  • Bit_score: 212
  • Evalue 4.80e-52
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 48.4
  • Coverage: 184.0
  • Bit_score: 140
  • Evalue 4.60e-31

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Taxonomy

Leifsonia rubra → Leifsonia → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 630
GTGGCCGAGTCCGGATGGGAACGCGTCGTGACCGAGCTGGTCGCCGAACGCGGCGACGCGCTGCTGCGCTACGCGACGCTGCTCACCGGCAACCCCGACGATGCCGCCGACCTCGTGCAGGACTCGCTCGTGCGCACCTTCGGTCGCCTGCGGAACGGGTTCACCGTCGCGAGCGCGGAGTCGTACGTGCGCCGCGCGATCCTCAACGCATCCGTCGACCGCGGGCGGCGCGTCACCCGCTGGCGCCGCGTCGCGCCCACCCAGTACGAGCCCGACGAGCTGCCCGCCGCCGACGAGGCGACGGCCCTCCGGCTCGACGTGCACGACGAGCTGCGGAAGCTCACCCCGCGCGAGCGCGCCTGCCTCGTGCTGCGCTACTACGACGACCTCAAGGTCGACGACATCGCGACCGCCCTCGGCATCAGCTCGGGCGCGGTGAAGCGCTACCTGAGCGACGGGCTCGCCAAGATGGCGATCGCGCTCGCCGACGACGGCACCGCCGCCGACCGACTCGGCCCCGGCGGGGCGCGCCCCGGCACGGGCACGACGCCACTGCGGCGACCGTCGCTCCCCCGGCCGAATGCGGCCCGCCCCGAGGAGAAGGAGGGCGACCGTGCCCACCGAAGCTGA
PROTEIN sequence
Length: 210
VAESGWERVVTELVAERGDALLRYATLLTGNPDDAADLVQDSLVRTFGRLRNGFTVASAESYVRRAILNASVDRGRRVTRWRRVAPTQYEPDELPAADEATALRLDVHDELRKLTPRERACLVLRYYDDLKVDDIATALGISSGAVKRYLSDGLAKMAIALADDGTAADRLGPGGARPGTGTTPLRRPSLPRPNAARPEEKEGDRAHRS*