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SCNpilot_BF_INOC_scaffold_1198

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1198_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..162)
DNA (162bp) protein (54aa)
Zinc finger, DksA/TraR C4-type n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SL71_NOCSJ
histone protein
swib/mdm2 domain-containing protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_BF_INOC_scaffold_1198_2
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(349..1497)
DNA (1149bp) protein (383aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
nrdB; ribonucleoside-diphosphate reductase, beta subunit NrdB (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRM7_9BURK
SCNpilot_BF_INOC_scaffold_1198_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1631..4540)
DNA (2910bp) protein (970aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Variovorax paradoxus RepID=UPI00036CF8B3
ribonucleoside-diphosphate reductase subunit alpha
SCNpilot_BF_INOC_scaffold_1198_4
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4880..5488)
DNA (609bp) protein (203aa)
Candidate amidase protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y016_RAMTT
ampD; amidase
Candidate amidase protein {ECO:0000313|EMBL:AEG94565.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataoui
SCNpilot_BF_INOC_scaffold_1198_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5475..7007)
DNA (1533bp) protein (511aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUH2_DELSC
AAA domain family protein {ECO:0000313|EMBL:KFJ10841.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pse
two component, sigma54 specific, Fis family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1198_6
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7030..8769)
DNA (1740bp) protein (580aa)
multi-sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VSQ1_POLNA
integral membrane sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_1198_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8769..8996)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MS08_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91998.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp.
hypothetical protein
SCNpilot_BF_INOC_scaffold_1198_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8993..9802)
DNA (810bp) protein (270aa)
Cytochrome c assembly protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IE63_9BURK
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:AFU47656.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. K
SCNpilot_BF_INOC_scaffold_1198_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9906..11333
DNA (1428bp) protein (476aa)
signal recognition particle protein Srp54 n=1 Tax=Variovorax paradoxus RepID=UPI00036346E1
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhold
SCNpilot_BF_INOC_scaffold_1198_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11435..12574)
DNA (1140bp) protein (380aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J2TSN5_9BURK
branched chain amino acid ABC transporter periplasmic protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
branched chain amino acid ABC transporter periplasmic protein
SCNpilot_BF_INOC_scaffold_1198_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12672..13793
DNA (1122bp) protein (374aa)
Putative zinc protease protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VT20_POLNA
putative zinc protease
Putative zinc protease protein {ECO:0000313|EMBL:ABM38798.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" sou
SCNpilot_BF_INOC_scaffold_1198_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13817..14071)
DNA (255bp) protein (85aa)
Acyl-coA-binding protein, ACBP n=2 Tax=Acidovorax RepID=A1W381_ACISJ
acyl-CoA-binding protein
Acyl-coA-binding protein, ACBP {ECO:0000313|EMBL:ABM40706.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
SCNpilot_BF_INOC_scaffold_1198_13
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14134..14802)
DNA (669bp) protein (223aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J0KR74_9BURK
TetR family transcriptional regulator Tax=GWA2_Burkholderiales_64_37_curated
TetR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1198_14
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14812..15111)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221E0_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD68363.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rho
SCNpilot_BF_INOC_scaffold_1198_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15208..15507
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:ABM40698.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
Displaying 15 items

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