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SCNpilot_BF_INOC_scaffold_1246

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1246_1
Sutterella wadsworthensis, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..95)
DNA (93bp) protein (31aa)
elongation factor Tu n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI0003637990
tuf; translation elongation factor Tu
Elongation factor Tu {ECO:0000313|EMBL:EPD97578.1}; Flags: Fragment;; TaxID=1203554 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella.;" source="Sutter
SCNpilot_BF_INOC_scaffold_1246_2
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(468..1280)
DNA (813bp) protein (271aa)
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBas
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002DF7059
SCNpilot_BF_INOC_scaffold_1246_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1338..2141)
DNA (804bp) protein (268aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGG6_9BURK
SCNpilot_BF_INOC_scaffold_1246_4
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2134..2277)
DNA (144bp) protein (48aa)
Uncharacterized protein (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9L8_ACIDE
hypothetical protein Tax=GWA2_Curvibacter_64_110_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1246_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2291..3325)
DNA (1035bp) protein (345aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
Anthranilate phosphoribosyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=TRPD_POLSJ
SCNpilot_BF_INOC_scaffold_1246_6
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3368..4048)
DNA (681bp) protein (227aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJQ0_ACIAC
lysine exporter protein LysE/YggA
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ABM31188.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
SCNpilot_BF_INOC_scaffold_1246_7
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4069..4647)
DNA (579bp) protein (193aa)
Anthranilate synthase subunit II {ECO:0000313|EMBL:EXU79949.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EXU79949.1};; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
Glutamine amidotransferase of anthranilate n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVX6_COMT2
glutamine amidotransferase of anthranilate
SCNpilot_BF_INOC_scaffold_1246_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4730..5173)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I7_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34850.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
SCNpilot_BF_INOC_scaffold_1246_9
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5170..6669)
DNA (1500bp) protein (500aa)
anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I {ECO:0000313|EMBL:ACM31840.1}; EC=4.1.3.27 {ECO:0000313|EMBL:ACM31840.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
Anthranilate synthase component I n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBS0_ACIET
SCNpilot_BF_INOC_scaffold_1246_10

Not on your lists

7023..7607
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DLK8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98942.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative lipoprotein transmembrane
SCNpilot_BF_INOC_scaffold_1246_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7680..8390)
DNA (711bp) protein (237aa)
phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2N0_9BURK
phosphoglycolate phosphatase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_BF_INOC_scaffold_1246_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8511..9191)
DNA (681bp) protein (227aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
ribulose-phosphate 3-epimerase n=1 Tax=Brachymonas chironomi RepID=UPI000369D851
SCNpilot_BF_INOC_scaffold_1246_13
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9225..9620
DNA (396bp) protein (132aa)
magnesium transporter ApaG n=1 Tax=Acidovorax avenae RepID=UPI0002E6EA0D
apaG; ApaG protein
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source
SCNpilot_BF_INOC_scaffold_1246_14
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9640..11676
DNA (2037bp) protein (679aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00035D02BE
putative site-specific recombinase transmembrane protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
putative site-specific recombinase transmembrane protein
SCNpilot_BF_INOC_scaffold_1246_15
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11787..13055
DNA (1269bp) protein (423aa)
Kef-type K+ transport system, membrane component n=1 Tax=Acidovorax sp. CF316 RepID=J0KJX7_9BURK
sodium/hydrogen exchanger
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1246_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13052..14185
DNA (1134bp) protein (378aa)
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=160
Carboxylate-amine ligase Alide2_4404 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8I4_ALIDK
carboxylate-amine ligase ybdK
SCNpilot_BF_INOC_scaffold_1246_17
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14182..15030
DNA (849bp) protein (283aa)
peptidase C26; K07010 putative glutamine amidotransferase id=5079749 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
peptidase C26
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1246_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15049..16080
DNA (1032bp) protein (344aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {E
Thiamine-monophosphate kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC0_ALIDB
SCNpilot_BF_INOC_scaffold_1246_19
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16094..16969
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037AF736
Uncharacterized protein {ECO:0000313|EMBL:KJA11600.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1246_20
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16984..17664
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002375594
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1246_21

Not on your lists

comp(17921..18601)
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6L107_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:BAH90426.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1246_22

Not on your lists

18733..19278
DNA (546bp) protein (182aa)
Carboxymuconolactone decarboxylase n=1 Tax=uncultured bacterium RepID=C6L105_9BACT
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:BAH90424.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
carboxymuconolactone decarboxylase
SCNpilot_BF_INOC_scaffold_1246_23

Not on your lists

comp(19348..20409)
DNA (1062bp) protein (354aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=77133 species="Bacteria; environmental samples.;" source="unc
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=uncultured bacterium RepID=C6L104_9BACT
ruvB; holliday junction DNA helicase ruvb
SCNpilot_BF_INOC_scaffold_1246_24
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20487..20936)
DNA (450bp) protein (150aa)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=RUVA_RHOFD
ruvA; Holliday junction DNA helicase RuvA
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1246_25
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21130..21789)
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y8E0_LEPCP
two component LuxR family transcriptional regulator Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
two component LuxR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1246_26
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21909..24263)
DNA (2355bp) protein (785aa)
Putative sensor histidine kinase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT49_TISMK
yxjM; putative sensor histidine kinase
Putative sensor histidine kinase {ECO:0000313|EMBL:AFK55937.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrell
SCNpilot_BF_INOC_scaffold_1246_27

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24289..25248
DNA (960bp) protein (320aa)
Phosphate starvation-inducible protein PhoH n=1 Tax=uncultured bacterium RepID=C6L102_9BACT
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:BAH90421.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phoh family protein
SCNpilot_BF_INOC_scaffold_1246_28

Not on your lists

25307..25774
DNA (468bp) protein (156aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=77133 species="Bacteria; env
Endoribonuclease YbeY n=1 Tax=uncultured bacterium RepID=C6L101_9BACT
hypothetical protein
SCNpilot_BF_INOC_scaffold_1246_29
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25887..27287)
DNA (1401bp) protein (467aa)
Hypothetical conserved protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J8E1_COMT2
DEAD/DEAH box helicase {ECO:0000313|EMBL:KGH26635.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pse
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1246_30
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27324..27767)
DNA (444bp) protein (148aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comam
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Variovorax paradoxus RepID=UPI0003811B13
D-tyrosyl-tRNA(Tyr) deacylase
Displaying items 1-30 of 40 in total

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