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SCNpilot_BF_INOC_scaffold_1315

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1315_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(76..663)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000365FBC1
Phage integrase family protein {ECO:0000313|EMBL:BAR63339.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizo
integrase/recombinase
SCNpilot_BF_INOC_scaffold_1315_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(660..1586)
DNA (927bp) protein (309aa)
integrase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037DC5E1
phage integrase family protein
Site-specific recombinase XerD {ECO:0000313|EMBL:EJC82667.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
SCNpilot_BF_INOC_scaffold_1315_3
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1583..2827)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000360EDFB
PUTATIVE INTEGRASE/RECOMBINASE PROTEIN {ECO:0000313|EMBL:CAD31628.1}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizob
integrase/recombinase
SCNpilot_BF_INOC_scaffold_1315_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3206..3814
DNA (609bp) protein (203aa)
hypothetical protein id=12553433 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24165.1}; Flags: Fragment;; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sou
hypothetical protein
SCNpilot_BF_INOC_scaffold_1315_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3946..4740
DNA (795bp) protein (265aa)
enoyl-CoA hydratase/isomerase (EC:4.2.1.17)
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:CAP41465.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAP41465.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; A
Putative enoyl-CoA hydratase/isomerase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBP4_BORPD
SCNpilot_BF_INOC_scaffold_1315_6
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4842..5552
DNA (711bp) protein (237aa)
TetR family transcriptional regulator id=12553419 bin=BDI species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
TetR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1315_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5633..6415)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBK9_BORPD
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1315_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6545..7681
DNA (1137bp) protein (379aa)
alpha-methylacyl-CoA racemase; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4] id=12553429 bin=BDI species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
alpha-methylacyl-CoA racemase (EC:5.1.99.4)
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1315_9
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7860..9098
DNA (1239bp) protein (413aa)
thiolase id=12553428 bin=BDI species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
thiolase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1315_10
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9139..9834
DNA (696bp) protein (232aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
short-chain dehydrogenase/reductase SDR id=12553427 bin=BDI species=Burkholderia phytofirmans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1315_11
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9993..11144
DNA (1152bp) protein (384aa)
acyl-CoA dehydrogenase domain-containing protein id=12553421 bin=BDI species=Pseudomonas sp. G5(2012) genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
acyl-CoA dehydrogenase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1315_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11179..12054
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036562DD
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL78979.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
inner-membrane translocator
SCNpilot_BF_INOC_scaffold_1315_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12061..13137
DNA (1077bp) protein (359aa)
Inner-membrane translocator id=1270633 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWE1_Burkholderiales_65_30_curated
inner-membrane translocator
SCNpilot_BF_INOC_scaffold_1315_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13134..13967
DNA (834bp) protein (278aa)
High-affinity branched-chain amino acid transport ATP-binding protein livG {ECO:0000313|EMBL:EIK92085.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK92085.1};; TaxID=795665 species="Bacteria; Proteobacteria; Bet
High-affinity branched-chain amino acid transport ATP-binding protein livG n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MS95_9BURK
ABC transporter-like protein
SCNpilot_BF_INOC_scaffold_1315_15
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13981..14769
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030C3668
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
ABC transporter-like protein
SCNpilot_BF_INOC_scaffold_1315_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14806..16665
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] id=5080541 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWE1_Burkholderiales_65_30_curated
AMP-dependent synthetase and ligase
SCNpilot_BF_INOC_scaffold_1315_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16694..17854
DNA (1161bp) protein (387aa)
extracellular ligand-binding receptor Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Extracellular ligand-binding receptor id=1270637 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
putative ABC transporter, branched-chain amino acid-binding protein
SCNpilot_BF_INOC_scaffold_1315_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17932..19116
DNA (1185bp) protein (395aa)
Thiolase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125R2_POLSJ
thiolase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
lipid-transfer protein
SCNpilot_BF_INOC_scaffold_1315_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19165..19620
DNA (456bp) protein (152aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
MaoC-like dehydratase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UI9_CUPPJ
acyl dehydratase MaoC
SCNpilot_BF_INOC_scaffold_1315_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19642..20547
DNA (906bp) protein (302aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YKT9_9BURK
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
short-chain dehydrogenase/reductase SDR
SCNpilot_BF_INOC_scaffold_1315_21
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20596..21798
DNA (1203bp) protein (401aa)
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UG9_CUPPJ
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region {ECO:0000313|EMBL:AAZ63215.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholder
SCNpilot_BF_INOC_scaffold_1315_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21830..22966
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase (EC:1.3.99.-); K00257 [EC:1.3.99.-] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UJ0_CUPPJ
acyl-CoA dehydrogenase
SCNpilot_BF_INOC_scaffold_1315_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23014..23841
DNA (828bp) protein (276aa)
Putative enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NCI8_RHOPA
paaG; enoyl-CoA hydratase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
paaG1; enoyl-CoA hydratase
Displaying 23 items

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