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SCNpilot_BF_INOC_scaffold_1753

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1753_1
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..323)
DNA (321bp) protein (107aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VP96_POLNA
extracellular ligand-binding receptor
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1753_2
Arthrobacter gangotriensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(419..853)
DNA (435bp) protein (145aa)
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase {ECO:0000313|EMBL:EMQ98031.1}; TaxID=1276920 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobact
SCNpilot_BF_INOC_scaffold_1753_3
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(857..1285)
DNA (429bp) protein (143aa)
Candidate DNA polymerase III, chi subunit n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XX91_RAMTT
holC; DNA polymerase III, chi subunit
Candidate DNA polymerase III, chi subunit {ECO:0000313|EMBL:AEG93035.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ram
SCNpilot_BF_INOC_scaffold_1753_4
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1314..2852)
DNA (1539bp) protein (513aa)
Probable cytosol aminopeptidase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I4Z4_9BURK
leucyl aminopeptidase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_1753_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2876..3973
DNA (1098bp) protein (366aa)
Permease n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXN6_9BURK
Permease {ECO:0000313|EMBL:EHL22846.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
permease
SCNpilot_BF_INOC_scaffold_1753_6
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3970..5076
DNA (1107bp) protein (369aa)
Permease n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXN5_9BURK
permease Tax=GWA2_Burkholderiales_64_37_curated
permease
SCNpilot_BF_INOC_scaffold_1753_7
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5079..5465
DNA (387bp) protein (129aa)
Cobalamin (Vitamin B12) biosynthesis CbiX protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TRZ0_ACIAC
cobalamin (vitamin B12) biosynthesis CbiX protein
Cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:ABM33728.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sour
SCNpilot_BF_INOC_scaffold_1753_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5509..6450
DNA (942bp) protein (314aa)
CysB family transcriptional regulator n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F1124C
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EER60001.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
transcriptional regulator CysB-like protein
SCNpilot_BF_INOC_scaffold_1753_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6440..7612
DNA (1173bp) protein (391aa)
putative aminotransferase; K14287 methionine aminotransferase [EC:2.6.1.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Methionine aminotransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK97_9BURK
methionine aminotransferase
SCNpilot_BF_INOC_scaffold_1753_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7759..8799)
DNA (1041bp) protein (347aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Acidovorax sp. CF316 RepID=J0KLY6_9BURK
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJE52223.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkh
araC family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1753_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8928..11990
DNA (3063bp) protein (1021aa)
Peptidase S45 penicillin amidase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I177_9BURK
peptidase S45 penicillin amidase
Peptidase S45 penicillin amidase {ECO:0000313|EMBL:AFU46000.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp
SCNpilot_BF_INOC_scaffold_1753_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12118..13002)
DNA (885bp) protein (295aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
6-phosphogluconate dehydrogenase NAD-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U137_ALIDB
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:GAO23387.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicy
SCNpilot_BF_INOC_scaffold_1753_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12999..13994)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIV3_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM33119.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (str
SCNpilot_BF_INOC_scaffold_1753_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14219..15070)
DNA (852bp) protein (284aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO21464.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp
SCNpilot_BF_INOC_scaffold_1753_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15182..15838)
DNA (657bp) protein (219aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
dihydrolipoamide dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380A0C2
dihydrolipoamide dehydrogenase
SCNpilot_BF_INOC_scaffold_1753_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15796..16563)
DNA (768bp) protein (256aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
Dihydrolipoamide dehydrogenase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9R1_ACIDE
dihydrolipoamide dehydrogenase
SCNpilot_BF_INOC_scaffold_1753_17
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16583..16891)
DNA (309bp) protein (103aa)
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (EC:2.3.1.61); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=GWA2_Curvibacter_64_1
dihydrolipoamide dehydrogenase n=1 Tax=Brachymonas chironomi RepID=UPI00035E83FB
dihydrolipoamide dehydrogenase
SCNpilot_BF_INOC_scaffold_1753_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16907..18556)
DNA (1650bp) protein (550aa)
dihydrolipoamide acetyltransferase (EC:2.3.1.61)
Dihydrolipoamide acetyltransferase id=1266291 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_BF_INOC_scaffold_1753_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18569..19642)
DNA (1074bp) protein (358aa)
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] Tax=GWE1_Burkholderiales_65_30_curated
aceE; pyruvate dehydrogenase subunit e1 (EC:1.2.4.1)
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] id=5083018 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
SCNpilot_BF_INOC_scaffold_1753_20
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19654..21171)
DNA (1518bp) protein (506aa)
aceE; pyruvate dehydrogenase subunit e1 (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; C
Pyruvate dehydrogenase E1 component n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIU9_ACIET
SCNpilot_BF_INOC_scaffold_1753_21
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21378..23900
DNA (2523bp) protein (841aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ram
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWK3_RAMTT
histidine kinase
SCNpilot_BF_INOC_scaffold_1753_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23897..24523
DNA (627bp) protein (209aa)
Response regulator receiver id=1266294 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
two component LuxR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_BF_INOC_scaffold_1753_23
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24622..25479
DNA (858bp) protein (286aa)
Bifunctional protein FolD n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWK1_RAMTT
folD; bifunctional methylenetetrahydrofolate dehydrogenase/Methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tat
SCNpilot_BF_INOC_scaffold_1753_24
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25724..27772
DNA (2049bp) protein (683aa)
Candidate oligopeptidase A n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWK0_RAMTT
oligopeptidase A Tax=GWA2_Curvibacter_64_110_curated
prlC; oligopeptidase A
SCNpilot_BF_INOC_scaffold_1753_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27830..28483
DNA (654bp) protein (218aa)
Glutaredoxin n=2 Tax=Alicycliphilus denitrificans RepID=E8U120_ALIDB
glutaredoxin
Glutaredoxin {ECO:0000313|EMBL:ADU99957.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliph
SCNpilot_BF_INOC_scaffold_1753_26
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28584..28814)
DNA (231bp) protein (77aa)
PF04325 family protein n=1 Tax=Haemophilus paraphrohaemolyticus HK411 RepID=I2NLG0_9PAST
Uncharacterized protein {ECO:0000313|EMBL:KDB53485.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans D
hypothetical protein
SCNpilot_BF_INOC_scaffold_1753_27
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28842..30350)
DNA (1509bp) protein (503aa)
ornithine decarboxylase (EC:4.1.1.17)
Ornithine decarboxylase {ECO:0000313|EMBL:ABM42903.1}; EC=4.1.1.17 {ECO:0000313|EMBL:ABM42903.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
Ornithine decarboxylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W9H8_ACISJ
Displaying 27 items

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