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SCNpilot_BF_INOC_scaffold_3089

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3089_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..447
DNA (447bp) protein (149aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysine--tRNA ligase n=1 Tax=Variovorax paradoxus B4 RepID=T1X8Z7_VARPD
lysS; lysyl-tRNA synthetase
SCNpilot_BF_INOC_scaffold_3089_2
unknown

Not on your lists

comp(539..949)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3089_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1177..1482
DNA (306bp) protein (102aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWL8_ALIDB
ferredoxin, C-terminal protein
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ADU99541.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.
SCNpilot_BF_INOC_scaffold_3089_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1643..1864
DNA (222bp) protein (74aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8R9_ACIDE
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:EER59136.1}; Flags: Fragment;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
SCNpilot_BF_INOC_scaffold_3089_5
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2533..3567
DNA (1035bp) protein (345aa)
polyphosphate kinase 1 (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferas
polyphosphate kinase n=1 Tax=Acidovorax avenae RepID=UPI0003686414
SCNpilot_BF_INOC_scaffold_3089_6
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3516..4037
DNA (522bp) protein (174aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferas
polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Acidovorax sp. CF316 RepID=J0UG00_9BURK
SCNpilot_BF_INOC_scaffold_3089_7
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4034..4498
DNA (465bp) protein (155aa)
Phosphohistidine phosphatase SixA n=1 Tax=Acidovorax sp. CF316 RepID=J1ES79_9BURK
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EJE55051.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
phosphohistidine phosphatase SixA
SCNpilot_BF_INOC_scaffold_3089_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4665..4931
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR52_ALIDB
transposase is3/is911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:AEB84790.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicy
SCNpilot_BF_INOC_scaffold_3089_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4949..5761
DNA (813bp) protein (271aa)
Integrase catalytic region protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR51_ALIDB
integrase catalytic region protein
Integrase catalytic region protein {ECO:0000313|EMBL:GAO21139.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
SCNpilot_BF_INOC_scaffold_3089_10
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5796..6041)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XEP1_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23805.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denit
SCNpilot_BF_INOC_scaffold_3089_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6038..7138)
DNA (1101bp) protein (367aa)
TrbI-like protein n=1 Tax=Pseudomonas aeruginosa U2504 RepID=U8ZR26_PSEAI
Conjugative transfer protein TrbI {ECO:0000313|EMBL:GAO26454.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycl
conjugation TrbI family protein
SCNpilot_BF_INOC_scaffold_3089_12
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7135..8049)
DNA (915bp) protein (305aa)
Type IV secretion system protein VirD4
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 id=12551703 bin=BDI species=Delftia acidovorans genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Type IV secretory system Conjugative DNA transfer {ECO:0000313|EMBL:KCV66885.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" sou
SCNpilot_BF_INOC_scaffold_3089_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8267..8497)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ6_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34934.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
SCNpilot_BF_INOC_scaffold_3089_14
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8818..9438)
DNA (621bp) protein (207aa)
LysR family transcriptional regulator n=1 Tax=Thauera phenylacetica B4P RepID=N6Z262_9RHOO
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:ENO97940.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phen
SCNpilot_BF_INOC_scaffold_3089_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9466..10959)
DNA (1494bp) protein (498aa)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:AEB85349.1}; EC=4.1.99.3 {ECO:0000313|EMBL:AEB85349.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
Deoxyribodipyrimidine photo-lyase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5U2_ALIDK
SCNpilot_BF_INOC_scaffold_3089_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10967..11656)
DNA (690bp) protein (230aa)
Glutathione S-transferase domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5U1_ALIDK
glutathione S-transferase domain-containing protein
Glutathione S-transferase domain protein {ECO:0000313|EMBL:AEB85348.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="A
SCNpilot_BF_INOC_scaffold_3089_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11653..12132)
DNA (480bp) protein (160aa)
Isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5U0_ALIDK
isomerase
Isomerase {ECO:0000313|EMBL:AEB85347.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (st
SCNpilot_BF_INOC_scaffold_3089_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12136..12918)
DNA (783bp) protein (261aa)
short-chain dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036668F4
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAD24974.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
short-chain dehydrogenase/reductase SDR
SCNpilot_BF_INOC_scaffold_3089_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12923..13459)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036773A7
Uncharacterized protein {ECO:0000313|EMBL:GAD24973.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
SCNpilot_BF_INOC_scaffold_3089_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13464..13745)
DNA (282bp) protein (94aa)
Major facilitator superfamily MFS_1 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5T7_ALIDK
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB85344.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilu
Displaying 20 items

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