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SCNpilot_BF_INOC_scaffold_1945

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1945_1
unknown

Not on your lists

comp(2..211)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(512..1231)
DNA (720bp) protein (240aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=R6MY49_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost
RNA polymerase, sigma 29 subunit, SigE
SCNpilot_BF_INOC_scaffold_1945_3
unknown

Not on your lists

comp(1315..1467)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_4
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1487..2347)
DNA (861bp) protein (287aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; St
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium sp. CAG:557 RepID=R6HBY4_9CLOT
sigma-E processing peptidase SpoIIGA
SCNpilot_BF_INOC_scaffold_1945_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2505..2765)
DNA (261bp) protein (87aa)
Coat F domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2C8_9CLOT
Coat F domain protein {ECO:0000313|EMBL:EJF40914.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2785..2970)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFQ4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23302.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1945_7
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3095..3442)
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;"
mRNA interferase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LT80_9FIRM
transcriptional modulator of MazE/toxin MazF
SCNpilot_BF_INOC_scaffold_1945_8
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3610..5412)
DNA (1803bp) protein (601aa)
L-amino-acid oxidase (EC:1.4.3.2) rbh
L-amino-acid oxidase {ECO:0000313|EMBL:ADY56217.1}; EC=1.4.3.2 {ECO:0000313|EMBL:ADY56217.1};; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;
L-amino-acid oxidase n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T0S8_SYNGF
SCNpilot_BF_INOC_scaffold_1945_9
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(5436..5906)
DNA (471bp) protein (157aa)
ndk; nucleoside diphosphate kinase Ndk (EC:2.7.4.6)
ndk; nucleoside diphosphate kinase Ndk; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=GWB2_Clostridiales_37_7_curated
Nucleoside diphosphate kinase Ndk n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LG06_ACEWD
SCNpilot_BF_INOC_scaffold_1945_10
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5908..6879)
DNA (972bp) protein (324aa)
Oxidoreductase domain protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZVZ9_MAHA5
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AEE95373.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incert
SCNpilot_BF_INOC_scaffold_1945_11
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6909..7400)
DNA (492bp) protein (164aa)
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EWM54867.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;
SCNpilot_BF_INOC_scaffold_1945_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7416..8951)
DNA (1536bp) protein (512aa)
YjeF domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU46_9CLOT
carbohydrate kinase
Carbohydrate kinase {ECO:0000313|EMBL:CDZ23730.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1945_13
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8953..9324)
DNA (372bp) protein (124aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
Holo-[acyl-carrier-protein] synthase n=1 Tax=Ruminococcus albus 8 RepID=E9SAU8_RUMAL
holo-acyl-carrier-protein synthase
SCNpilot_BF_INOC_scaffold_1945_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9305..9838)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MY43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC03740.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_15
unknown

Not on your lists

comp(10001..10912)
DNA (912bp) protein (304aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_16
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11041..12171)
DNA (1131bp) protein (377aa)
Beta-glucanase/beta-glucan synthetase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EAS2_THECK
Beta-galactosidase {ECO:0000313|EMBL:CQR52423.1}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. Arc-Hr.;"
beta-glucanase/beta-glucan synthetase
SCNpilot_BF_INOC_scaffold_1945_17
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12524..13738
DNA (1215bp) protein (405aa)
UPF0348 protein BN578_01762 n=1 Tax=Clostridium leptum CAG:27 RepID=R6NC17_9CLOT
UPF0348 protein BN578_01762 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clo
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13735..14001
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MY67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60503.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_19
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14107..14652
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0002E87611
Uncharacterized protein {ECO:0000313|EMBL:KGM98003.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_20
Bacillus selenatarsenatis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14665..15696
DNA (1032bp) protein (344aa)
Beta-glucosidase {ECO:0000313|EMBL:GAM14765.1}; EC=3.2.1.21 {ECO:0000313|EMBL:GAM14765.1};; TaxID=1321606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus
hypothetical protein n=1 Tax=Paenisporosarcina sp. TG-14 RepID=UPI0002D9C5EA
glycosyl hydrolase family 3
SCNpilot_BF_INOC_scaffold_1945_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15689..16135
DNA (447bp) protein (149aa)
bglX3; periplasmic beta-glucosidase BglX (EC:3.2.1.21)
Periplasmic beta-glucosidase BglX {ECO:0000313|EMBL:AGF59368.1}; EC=3.2.1.21 {ECO:0000313|EMBL:AGF59368.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
Periplasmic beta-glucosidase BglX n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MTC6_9CLOT
Displaying 21 items

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