ggKbase home page

SCNpilot_BF_INOC_scaffold_1812_10

Organism: SCNpilot_BF_INOC_Clostridium_42_5_partial

partial RP 46 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: comp(12615..13913)

Top 3 Functional Annotations

Value Algorithm Source
Collagen triple helix repeat n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRJ2_CLOPH similarity UNIREF
DB: UNIREF100
  • Identity: 55.6
  • Coverage: 354.0
  • Bit_score: 362
  • Evalue 5.50e-97
triple helix repeat-containing collagen similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 354.0
  • Bit_score: 362
  • Evalue 1.60e-97
Collagen triple helix repeat {ECO:0000313|EMBL:ABX42066.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 7 similarity UNIPROT
DB: UniProtKB
  • Identity: 55.6
  • Coverage: 354.0
  • Bit_score: 362
  • Evalue 7.70e-97

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lachnoclostridium phytofermentans → Lachnoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1299
ATGCAATATGACGAGTTTGAAAATGAAGACTACGAACAAGAGTATGAATTTGCTTTTGATGGTCACGGAAAAGATAACTGCTGTGAGAAACTCTGTGAGGAGTATTATCAAAAATTACGTGATAAATGGCTTGATTATTTCTGTGCAAAACACGATGCGTGCTGTACCAAAGCATGCAGAGAATATTATAAGCGCAAATACGAGGAATGCGAACAATATTTCAAGGAGAAAATCCGTTGTTGCAAAGAAAAATGCAAGCATCATGACCCCTGCTGCCCCGGACCGACCGGACCAACAGGCCCCACAGGCCCCACAGGGCCGAGAGGTCCCCAGGGCTGTCCTGGTGAGCGTGGACCCATAGGGCCCACAGGACCTGAAGGCTGTCCGGGGCCCAAGGGCGACACAGGACCCACAGGACCAAGAGGACCCGAAGGCTGTCCGGGGCCCAAAGGCGACACAGGACCTACAGGACCCAAGGGAGATCCCGGTGCCACAGGCGCAACGGGAGCCACAGGTGCAACGGGACCCACAGGACCGAGAGGACCCGAAGGCTGTCCGGGACCCAAGGGCGATACAGGACCCACAGGACCGAGAGGACCTGAAGGTTGTCCGGGACCCAAGGGCTGTCCGGGACCCAAAGGCGACACAGGACCTACAGGACCCAAAGGTGATCCCGGTGCCACAGGCGCAACAGGCGCAACAGGTGCAACGGGACCAACAGGACCGAGAGGACCCGAAGGTTGTCCGGGACCCAAGGGCGATACAGGGCCGAGAGGACCACAAGGCATTCAGGGCGAACCCGGTCCCAGAGGCTCTATCGGACCCGTAGGACCAGCAGGCCCCACAGGTCCTATGGGACCGGCAGGACCCTCAGGCGTTTTGAATTATGCAGACTTTTTTGCATTGATGCCTTGTGACAACGCCAATCAGGTCGACCCCGGCAAGGATGTTTGCTTCCCGAATGACGGTCCGAACAGCGGCTATGCAATTTCCCGCATTGGTCCCGATGCATTTGTTCTGACGAATGCAGGCACCTATCAGGTGCAGTTCCAAGCAAGCGTAGCGGAGGCAGGACAGCTTGTTCTGACACTGAACGGACGTGAGCTGAATTACACGGTTGTGGGACGTTATGGCGGCAGCACTCAAATTGTCGGTATTGCTTTGGTGAATACGACATGCAGAGATGCGGTTTTGTCTGTCAGAAACCCGAAATGCAGCTGCAACTCCCTCACGCTCACCCCGTTTGCGGGCGGACAAAAGGCAGTATCGGCACATTTGGTTATCACACAGATCGGATAG
PROTEIN sequence
Length: 433
MQYDEFENEDYEQEYEFAFDGHGKDNCCEKLCEEYYQKLRDKWLDYFCAKHDACCTKACREYYKRKYEECEQYFKEKIRCCKEKCKHHDPCCPGPTGPTGPTGPTGPRGPQGCPGERGPIGPTGPEGCPGPKGDTGPTGPRGPEGCPGPKGDTGPTGPKGDPGATGATGATGATGPTGPRGPEGCPGPKGDTGPTGPRGPEGCPGPKGCPGPKGDTGPTGPKGDPGATGATGATGATGPTGPRGPEGCPGPKGDTGPRGPQGIQGEPGPRGSIGPVGPAGPTGPMGPAGPSGVLNYADFFALMPCDNANQVDPGKDVCFPNDGPNSGYAISRIGPDAFVLTNAGTYQVQFQASVAEAGQLVLTLNGRELNYTVVGRYGGSTQIVGIALVNTTCRDAVLSVRNPKCSCNSLTLTPFAGGQKAVSAHLVITQIG*