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SCNpilot_BF_INOC_scaffold_949_1

Organism: SCNpilot_BF_INOC_Clostridium_42_5_partial

partial RP 46 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: 3..1772

Top 3 Functional Annotations

Value Algorithm Source
mfd; Transcription-repair-coupling factor (EC:3.6.4.-) similarity KEGG
DB: KEGG
  • Identity: 69.0
  • Coverage: 580.0
  • Bit_score: 832
  • Evalue 5.50e-239
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=29343 species="Bacteria; Fir similarity UNIPROT
DB: UniProtKB
  • Identity: 69.0
  • Coverage: 580.0
  • Bit_score: 832
  • Evalue 2.80e-238
transcription-repair coupling factor n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003812FF8 similarity UNIREF
DB: UNIREF100
  • Identity: 70.7
  • Coverage: 580.0
  • Bit_score: 835
  • Evalue 3.90e-239

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Taxonomy

[Clostridium] cellulosi → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1770
AAAACCAAGGCCAGGGTCAAATCAGCCGTCAAGGATATGGCAAAGCAGCTGATTGCCCTCTATGCCGAACGCATGAAAATCAAGGGCTATGCCTTTTCTGAAGACACCGACCTCCAAAGCGATTTTGAACGGCGGTTTGAATACGACGAGACGGACGACCAGCTGCGCTGTACCGAGGAAATCAAACGGGATATGCAAAAAGAAATTCCCATGGACAGACTGCTTTGCGGGGACGTGGGCTTTGGAAAAACCGAGGTTGCCCTCCGGGCGGCATTCAAATGCATCGCAGAGGGGAAGCAGTGTGCGCTGCTGGTGCCAACCACGATACTGGCATGGCAGCATTATCAGACTGTTTTAAAACGAATGGAAGGACTGCCTGTGAAGGCGGAAATGATTTCACGCTTTCGGACAACGCAACAGCAGGAAGCAATTTTAAGAGAGCTGAAACGGGGTAATATCGATCTCATCGTGGGGACACATCGTCTGATTTCCAAGGACATTGTGTTCCGGGATCTGGGATTGCTGATTATTGACGAGGAGCAGCGGTTCGGCGTTGCCCAAAAGGAAAGGCTAAAAGAACTGTTCCCTGTGATTGATGTGCTGACCCTGTCGGCAACACCCATCCCCAGAACCCTGAACATGGCCATGTCAGGGCTTCGGGATATGTCTGTCATTGAGGAGTCTCCCGGAGACAGACACCCGGTCCAGACCTATGTTCTGGAGTATGACAGAGGCATCATTACCGATGCGATCCGAAAAGAGCTGCGCCGTGGCGGTCAGGCTTATTATATCCACAACCGGGTGGAAACTATCGAACGGGTGGCGGCTCGGCTGAAAGCGGATCTGCCGGACGCAAACATTGCGGTTGCTCACGGAAAAATGTCAGAGGAAGAGCTCTCAGAGGTCTGGAAACGGCTGATCGACGGGGAAATCAATGTACTTGTCTGCACCACCATCATCGAAACCGGCGTGGATGTGTCAAACTGCAATACGTTGATTATTGAGGATTCCGATCGGTTCGGACTGTCCCAGCTCCATCAGCTCAGAGGACGGGTGGGTCGCTCCTCCCGGCGTGCCTATGCCTATATGACCTTCCGAACCGGCAGGATTCTGACCGATATCGCTTACAAAAGGCTGGAGGCCATCCGGGAATTTACGGAGTTCGGGTCCGGGTTTAAAATCGCCATGCGGGATCTTGAAATCAGAGGAGCAGGCAATATTTTAGGGGCAAAACAGCACGGTCATCTGGAAGCCGTGGGTTATGATATGTATTTAAAAATGCTGTCGGATGCGGTCCGGGAGGAAAAGGGCGAAGCACCCGTCAGCGAGGTGGAATGTACCGTTGATTTGCAGATTGACGCCCATATTCCGGTAAAATATATTGAGAGCTTACCCCAGCGACTGTCTATATATCGCCGCATTGCGGAAATCCGCAGCGCTGAGGATCAAGAAGATGTGCTGGATGAATTGATCGACCGTTTCGGGGAACCGCCGAAGGCAGTAAGGGGCTTAATTGAGCTTGCGTTATTACGAAACCGTGCGGCAGGAGCGGGCATAACAGAAATTGCCCAAAGAGGAACCAGTCTCAATTTTTATCCGAAAACACTGGACTTGCAACGGGTTTCCATCATTGGCGCCCTTCTCAAAAACCGTGTTAAGCTAACCGCCAGCGAAAAGCCTTATGTGGCAGTAAAAATGTTGCCCAAGCAGTCCCCTGTGGACACGTTAACAGAAATGCTTCCATATTTTGAAGGGGAAGTCACAAAGTAA
PROTEIN sequence
Length: 590
KTKARVKSAVKDMAKQLIALYAERMKIKGYAFSEDTDLQSDFERRFEYDETDDQLRCTEEIKRDMQKEIPMDRLLCGDVGFGKTEVALRAAFKCIAEGKQCALLVPTTILAWQHYQTVLKRMEGLPVKAEMISRFRTTQQQEAILRELKRGNIDLIVGTHRLISKDIVFRDLGLLIIDEEQRFGVAQKERLKELFPVIDVLTLSATPIPRTLNMAMSGLRDMSVIEESPGDRHPVQTYVLEYDRGIITDAIRKELRRGGQAYYIHNRVETIERVAARLKADLPDANIAVAHGKMSEEELSEVWKRLIDGEINVLVCTTIIETGVDVSNCNTLIIEDSDRFGLSQLHQLRGRVGRSSRRAYAYMTFRTGRILTDIAYKRLEAIREFTEFGSGFKIAMRDLEIRGAGNILGAKQHGHLEAVGYDMYLKMLSDAVREEKGEAPVSEVECTVDLQIDAHIPVKYIESLPQRLSIYRRIAEIRSAEDQEDVLDELIDRFGEPPKAVRGLIELALLRNRAAGAGITEIAQRGTSLNFYPKTLDLQRVSIIGALLKNRVKLTASEKPYVAVKMLPKQSPVDTLTEMLPYFEGEVTK*