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SCNpilot_BF_INOC_scaffold_1474

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1474_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..520)
DNA (519bp) protein (173aa)
cytochrome BD oxidase subunit I n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B309AC
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:EGD59973.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
cytochrome bd ubiquinol oxidase subunit i
SCNpilot_BF_INOC_scaffold_1474_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(520..813)
DNA (294bp) protein (98aa)
cytochrome BD oxidase subunit I n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4871D
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:EGD59973.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
cytochrome bd ubiquinol oxidase subunit I
SCNpilot_BF_INOC_scaffold_1474_3
unknown

Not on your lists

955..1239
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1474_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1244..2527
DNA (1284bp) protein (428aa)
Cysteine ABC transporter permease/ATP-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z608_9SPHN
Cysteine ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:EGD59972.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphin
cysteine ABC transporter permease/ATP-binding protein
SCNpilot_BF_INOC_scaffold_1474_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2524..4092
DNA (1569bp) protein (523aa)
ABC transporter related protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z607_9SPHN
ABC transporter related protein {ECO:0000313|EMBL:EGD59971.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
ABC transporter-like protein
SCNpilot_BF_INOC_scaffold_1474_6
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4052..4381)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J6P0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB19795.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
cytochrome c class I
SCNpilot_BF_INOC_scaffold_1474_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4811..6619
DNA (1809bp) protein (603aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZW7_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12377.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
twin-arginine translocation pathway signal
SCNpilot_BF_INOC_scaffold_1474_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6666..7022
DNA (357bp) protein (119aa)
Putative transcriptional regulator (MarR family protein) n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0G8_9BRAD
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:EZP69566.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" s
putative transcriptional regulator
SCNpilot_BF_INOC_scaffold_1474_9
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7038..7262
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A736_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KJR62332.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum th
hypothetical protein
SCNpilot_BF_INOC_scaffold_1474_10
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7460..8500)
DNA (1041bp) protein (347aa)
NADPH:quinone oxidoreductase n=1 Tax=Fischerella muscicola RepID=UPI0003020639
Uncharacterized protein {ECO:0000313|EMBL:KCZ63027.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantic
alcohol dehydrogenase zinc-binding domain protein
SCNpilot_BF_INOC_scaffold_1474_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8747..9616)
DNA (870bp) protein (290aa)
OmpA/MotB domain protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEA5_NOVAD
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ABP64266.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
SCNpilot_BF_INOC_scaffold_1474_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9718..9993)
DNA (276bp) protein (92aa)
Muconate cycloisomerase {ECO:0000313|EMBL:EJU09767.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
SCNpilot_BF_INOC_scaffold_1474_13
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10086..11021)
DNA (936bp) protein (312aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VP16_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:EZP82696.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
LysR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1474_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11129..12184
DNA (1056bp) protein (352aa)
muconate cycloisomerase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C5F8
Muconate/chloromuconate cycloisomerase {ECO:0000313|EMBL:KEZ12855.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
muconate cycloisomerase
SCNpilot_BF_INOC_scaffold_1474_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12233..12523
DNA (291bp) protein (97aa)
Muconolactone Delta-isomerase {ECO:0000256|PIRNR:PIRNR001486}; Short=MIase {ECO:0000256|PIRNR:PIRNR001486};; EC=5.3.3.4 {ECO:0000256|PIRNR:PIRNR001486};; TaxID=13690 species="Bacteria; Proteobacteria;
muconolactone delta-isomerase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B4248
muconolactone delta-isomerase
SCNpilot_BF_INOC_scaffold_1474_16
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12547..13461
DNA (915bp) protein (305aa)
3'-RNA processing protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HPT0_9SPHN
3'-RNA processing protein {ECO:0000313|EMBL:EQB15062.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
intradiol ring-cleavage dioxygenase
SCNpilot_BF_INOC_scaffold_1474_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13475..14824
DNA (1350bp) protein (450aa)
Ring-hydroxylating dioxygenase, large terminal subunit n=1 Tax=Sphingobium sp. AP49 RepID=J2WJ55_9SPHN
Ring-hydroxylating dioxygenase, large terminal subunit {ECO:0000313|EMBL:KEZ12858.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobi
benzoate 1,2-dioxygenase subunit alpha
SCNpilot_BF_INOC_scaffold_1474_18
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14821..15327
DNA (507bp) protein (169aa)
2-chlorobenzoate 1,2-dioxygenase (EC:1.14.12.13)
2-chlorobenzoate 1,2-dioxygenase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VP10_9SPHN
2-chlorobenzoate 1,2-dioxygenase {ECO:0000313|EMBL:EJU09763.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
SCNpilot_BF_INOC_scaffold_1474_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15340..16125
DNA (786bp) protein (262aa)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase {ECO:0000313|EMBL:KEZ12860.1}; EC=1.3.1.25 {ECO:0000313|EMBL:KEZ12860.1};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacter
benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (EC:1.3.1.25)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C5FD
SCNpilot_BF_INOC_scaffold_1474_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..16919
DNA (783bp) protein (261aa)
3-oxoadipate enol-lactonase (EC:3.1.1.24)
3-oxoadipate enol-lactonase n=1 Tax=Sphingobium sp. AP49 RepID=J2L5R0_9SPHN
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:KFD26319.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium y
SCNpilot_BF_INOC_scaffold_1474_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16912..18270
DNA (1359bp) protein (453aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EC08_9SPHN
pyridine nucleotide-disulfide oxidoreductase
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KHK92286.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;
SCNpilot_BF_INOC_scaffold_1474_22
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18794..19486
DNA (693bp) protein (231aa)
Helix-turn-helix, type 11 domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2K1_SPHWW
helix-turn-helix, type 11 domain-containing protein
Helix-turn-helix, type 11 domain protein {ECO:0000313|EMBL:ABQ66517.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source
SCNpilot_BF_INOC_scaffold_1474_23
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19483..20706)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA76E
Tat (Twin-arginine translocation) pathway signal sequence domain protein {ECO:0000313|EMBL:EIZ77211.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomo
hypothetical protein
SCNpilot_BF_INOC_scaffold_1474_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20727..21248)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8INB7_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:GAO53399.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
SCNpilot_BF_INOC_scaffold_1474_25
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21245..22156)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C149_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77210.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
SCNpilot_BF_INOC_scaffold_1474_26
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22230..23546)
DNA (1317bp) protein (439aa)
RpfN protein, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E0F6
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34284.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
carbohydrate-selective porin OprB
SCNpilot_BF_INOC_scaffold_1474_27
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23597..25264)
DNA (1668bp) protein (556aa)
PTS system fructose-specific transporter subunit IIC n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKI7_9SPHN
PTS system fructose-specific transporter subunit IIC {ECO:0000313|EMBL:EJU11120.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomon
PTS fructose transporter subunit IIBC
SCNpilot_BF_INOC_scaffold_1474_28
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25290..26162)
DNA (873bp) protein (291aa)
1-phosphofructokinase (EC:2.7.1.56)
Phosphofructokinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEB8_9SPHN
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
SCNpilot_BF_INOC_scaffold_1474_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26162..27460)
DNA (1299bp) protein (433aa)
phosphotransferase system, enzyme I, PtsI (EC:2.7.3.9)
PTS fructose transporter subunit IIA n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037B7DAB
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:KEZ14988.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" so
SCNpilot_BF_INOC_scaffold_1474_30
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27601..29577
DNA (1977bp) protein (659aa)
membrane protein n=1 Tax=Pseudomonas geniculata RepID=UPI00029A4DA9
Transglutaminase domain protein {ECO:0000313|EMBL:EED40824.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Steno
transmembrane transglutaminase
Displaying items 1-30 of 52 in total

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