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SCNpilot_bf_inoc_scaffold_96_curated

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Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_96_curated_1
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2021..2596)
DNA (576bp) protein (192aa)
rubrerythrin n=1 Tax=Butyricimonas synergistica RepID=UPI000379CE39
Rubrerythrin {ECO:0000313|EMBL:CCY37135.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
Rubrerythrin
SCNpilot_bf_inoc_scaffold_96_curated_2
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2806..4701
DNA (1896bp) protein (632aa)
ABC transporter related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7M8_PALPW
ABC transporter; K15738 ATP-binding cassette, subfamily F, uup
ABC transporter related protein {ECO:0000313|EMBL:ADQ80722.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_96_curated_3
Bacteroides sp. CAG:875, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4728..5132
DNA (405bp) protein (135aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:875 RepID=R6ZPA2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDD47925.1}; TaxID=1262752 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:875.;"
SCNpilot_bf_inoc_scaffold_96_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5150..5380)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T827_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80871.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_96_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5510..6124
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T828_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80872.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_96_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6136..6780
DNA (645bp) protein (215aa)
3'-5' exonuclease n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T829_PALPW
3'-5' exonuclease
3'-5' exonuclease {ECO:0000313|EMBL:ADQ80873.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_96_curated_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6777..7952
DNA (1176bp) protein (392aa)
sam-dependent methyltransferase (EC:2.1.1.-); K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM-dependent methyltransferase {ECO:0000313|EMBL:ADQ80874.1}; EC=2.1.1.- {ECO:0000313|EMBL:ADQ80874.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SAM-dependent methyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T830_PALPW
SCNpilot_bf_inoc_scaffold_96_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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8100..8696
DNA (597bp) protein (199aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T831_PALPW
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_96_curated_9
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(8707..9213)
DNA (507bp) protein (169aa)
fldA; flavodoxin (EC:1.16.8.1)
Flavodoxin id=1747268 bin=GWD2_Bacteroidales_45_23 species=Parabacteroides goldsteinii genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_96_curated_10
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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9499..10989
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003603BD8
proteinase inhibitor i4 serpin; K13963 serpin B
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_96_curated_11
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11000..11578
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J352_9PORP
Cytochrome c nitrite reductase {ECO:0000313|EMBL:GAE84625.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
quinol oxidase; K15876 cytochrome c-type protein
SCNpilot_bf_inoc_scaffold_96_curated_12
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11729..13225
DNA (1497bp) protein (499aa)
Cytochrome c-552 {ECO:0000256|SAAS:SAAS00233541}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00275652};; EC=1.7.2.2 {ECO:0000256|SAAS:SAAS00233490};; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
Cytochrome c-552 n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X1Y7_9PORP
hypothetical protein
SCNpilot_bf_inoc_scaffold_96_curated_13
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13235..14521
DNA (1287bp) protein (429aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J349_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99893.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
respiratory nitrite reductase specific cytochrome c biogenesis protein NrfK/respiratory nitrite reductase specific cytochrome c biogenesis protein NrfL
SCNpilot_bf_inoc_scaffold_96_curated_14
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14523..15317
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X1Z1_9PORP
Cytochrome c biogenesis protein CcsA {ECO:0000313|EMBL:GAE84629.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
cytochrome c biogenesis protein CcsA
SCNpilot_bf_inoc_scaffold_96_curated_15
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15483..18158
DNA (2676bp) protein (892aa)
alpha-glucanotransferase; K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WZF9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04046.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
SCNpilot_bf_inoc_scaffold_96_curated_16
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18165..19184
DNA (1020bp) protein (340aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IW03_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02803.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_bf_inoc_scaffold_96_curated_17
Prevotella bivia, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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19245..20579
DNA (1335bp) protein (445aa)
Transporter, major facilitator family protein n=2 Tax=Prevotella bivia RepID=D1XW92_9BACT
Major Facilitator Superfamily transporter {ECO:0000313|EMBL:EIM32549.1}; Flags: Precursor;; TaxID=868129 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bivia DSM 20514.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_96_curated_18
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20762..22117
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WZF5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04042.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
1,4-alpha-glucan-branching protein
SCNpilot_bf_inoc_scaffold_96_curated_19
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22317..25352
DNA (3036bp) protein (1012aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6ILD6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB50095.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
TonB-linked outer membrane protein, SusC/RagA family
SCNpilot_bf_inoc_scaffold_96_curated_20
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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25377..26912
DNA (1536bp) protein (512aa)
SusD family protein n=3 Tax=Bacteroidales RepID=E1YSI4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:AKD02020.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
RagB/SusD domain-containing protein
SCNpilot_bf_inoc_scaffold_96_curated_21
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26961..28424
DNA (1464bp) protein (488aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WYY6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04159.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_96_curated_22
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28664..29392)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036996DE
two-component system response regulator
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_96_curated_23
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29404..30465)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003731ECD
two-component system sensor rbh
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_96_curated_24
Bacteroides helcogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30506..31729)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035F876D
hypothetical protein; K02004 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:ADV44658.1}; Flags: Precursor;; TaxID=693979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P; 36-108).;"
SCNpilot_bf_inoc_scaffold_96_curated_25
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31729..32475)
DNA (747bp) protein (249aa)
ABC transporter n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037FE6E7
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGF54972.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_bf_inoc_scaffold_96_curated_26
Bacteroides graminisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32499..33695)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003643DE9
Macrolide-specific efflux protein MacA {ECO:0000313|EMBL:GAK35689.1}; TaxID=1121097 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides graminisolvens DSM 19988 = JCM 15093.;"
efflux transporter, RND family, MFP subunit; K02005 HlyD family secretion protein
SCNpilot_bf_inoc_scaffold_96_curated_27
Bacteroides intestinalis CAG:315, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(33720..35057)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003674B00
Type I secretion outer membrane protein TolC family {ECO:0000313|EMBL:CDD91912.1}; TaxID=1263048 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides intestinalis CAG:315.;"
outer membrane efflux protein; K12340 outer membrane channel protein
SCNpilot_bf_inoc_scaffold_96_curated_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35451..38177
DNA (2727bp) protein (909aa)
Alpha amylase catalytic region n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8M9_PALPW
alpha amylase
Alpha amylase catalytic region {ECO:0000313|EMBL:ADQ81138.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_96_curated_29
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38333..40564
DNA (2232bp) protein (744aa)
Amino acid permease {ECO:0000313|EMBL:KJF43252.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
amino acid permease-associated protein id=1943545 bin=GWE2_Bacteroidetes_32_14 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
amino acid transporter
SCNpilot_bf_inoc_scaffold_96_curated_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40585..42384)
DNA (1800bp) protein (600aa)
DNA mismatch repair protein MutL n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T573_PALPW
DNA mismatch repair protein mutl; K03572 DNA mismatch repair protein MutL
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 1-30 of 141 in total

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