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SCNpilot_bf_inoc_scaffold_416_curated

Search features with annotation key words

Displaying items 31-48 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_416_curated_31
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(27112..27552)
DNA (441bp) protein (147aa)
Prophage antirepressor n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J243_9FLAO
putative DNA repair ATPase
Tax=GWA2_Bacteroidetes_31_9_curated
SCNpilot_bf_inoc_scaffold_416_curated_32
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27633..28874)
DNA (1242bp) protein (414aa)
collagenase; K08303 putative protease [EC:3.4.-.-]
Collagenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T676_PALPW
Collagenase {ECO:0000313|EMBL:ADQ80220.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_33
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28871..29740)
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T677_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80221.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_34
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30029..31039
DNA (1011bp) protein (337aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
tRNA-dihydrouridine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T678_PALPW
tRNA-u20-dihydrouridine synthase
SCNpilot_bf_inoc_scaffold_416_curated_35
unknown

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comp(31045..31206)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_416_curated_36
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(31347..31769)
DNA (423bp) protein (141aa)
Uncharacterized protein family UPF0079, ATPase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T681_PALPW
hypothetical protein; K06925 UPF0079 ATP-binding protein
Uncharacterized protein family UPF0079, ATPase {ECO:0000313|EMBL:ADQ80225.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_37
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31834..33651)
DNA (1818bp) protein (606aa)
UvrABC system protein C n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T682_PALPW
excinuclease ABC subunit c; K03703 excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_38
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33692..35617)
DNA (1926bp) protein (642aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T683_PALPW
glucose inhibited division protein a; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_39
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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35807..36022
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS07084.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
Putative uncharacterized protein id=2060732 bin=GWD2_Bacteroidales_45_23 species=Psychroflexus gondwanensis genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_416_curated_40
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36136..37686
DNA (1551bp) protein (517aa)
Putative type I restriction-modification system, M subunit {ECO:0000313|EMBL:EEI90864.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EEI90864.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
Putative type I restriction-modification system, M subunit n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1F5_9SPHI
N-6 DNA methylase
SCNpilot_bf_inoc_scaffold_416_curated_41
GWF1_Spirochaetes_51_8_curated, Spirochaetes, Bacteria

Not on your lists

37697..39388
DNA (1692bp) protein (564aa)
Putative uncharacterized protein id=2429330 bin=GWF1_Spirochaetes_51_8 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
hypothetical protein
Tax=GWF1_Spirochaetes_51_8_curated
SCNpilot_bf_inoc_scaffold_416_curated_42
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39508..40731
DNA (1224bp) protein (408aa)
Restriction modification system DNA specificity domain n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WM86_VEREI
restriction modification system DNA specificity subunit
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ABM58743.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_416_curated_43
RIFOXYD2_FULL_Sulfurimonas_37_8_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

40728..41591
DNA (864bp) protein (288aa)
ATP-binding protein n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029AE915
ATP-binding region, ATPase-like protein
Tax=RIFOXYD2_FULL_Sulfurimonas_37_8_curated
SCNpilot_bf_inoc_scaffold_416_curated_44
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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41596..41943
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029B532E
Uncharacterized protein {ECO:0000313|EMBL:GAB61194.1}; TaxID=247490 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_416_curated_45
Sulfurospirillum deleyianum, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

41947..42471
DNA (525bp) protein (175aa)
PilT protein domain-containing protein n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029B1B27
PilT protein domain-containing protein
PilT protein domain protein {ECO:0000313|EMBL:ACZ12514.1}; TaxID=525898 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175).;"
SCNpilot_bf_inoc_scaffold_416_curated_46
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

42472..45606
DNA (3135bp) protein (1045aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EEI90855.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EEI90855.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1E6_9SPHI
SCNpilot_bf_inoc_scaffold_416_curated_47
unknown

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45709..45840
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_416_curated_48
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

45859..46149
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Akkermansia muciniphila CAG:154 RepID=R6JBN9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDB55276.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia muciniphila CAG:154.;"
hypothetical protein
Displaying items 31-48 of 48 in total

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