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SCNpilot_bf_inoc_scaffold_416_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_416_curated_1
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

534..713
DNA (180bp) protein (60aa)
Putative uncharacterized protein id=4091617 bin=GWF2_Bacteroidetes_43_63 species=Leadbetterella byssophila genus=Leadbetterella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
hypothetical protein
Tax=GWF2_Bacteroidetes_43_63_curated
SCNpilot_bf_inoc_scaffold_416_curated_2
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

703..1302
DNA (600bp) protein (200aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSS9_LEAB4
filamentation induced by camp protein fic; K04095 cell filamentation protein
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ADQ15929.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_bf_inoc_scaffold_416_curated_3
unknown

Not on your lists

1600..2283
DNA (684bp) protein (228aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_416_curated_4
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

2818..3204
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HBC5_ILYPC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO83740.1}; Flags: Precursor;; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
SCNpilot_bf_inoc_scaffold_416_curated_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3313..4254
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H806_STRPR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN52820.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_bf_inoc_scaffold_416_curated_6
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4455..4631
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002E0835B
Tax=CG_Ignavi_01
SCNpilot_bf_inoc_scaffold_416_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4747..5946)
DNA (1200bp) protein (400aa)
acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T656_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_416_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5960..6919)
DNA (960bp) protein (320aa)
3-hydroxyacyl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T658_PALPW
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ADQ80202.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6973..7974)
DNA (1002bp) protein (334aa)
phosphotransacetylase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphotransacetylase {ECO:0000313|EMBL:ADQ80203.1}; EC=2.3.1.8 {ECO:0000313|EMBL:ADQ80203.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Phosphotransacetylase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T659_PALPW
SCNpilot_bf_inoc_scaffold_416_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8112..10157)
DNA (2046bp) protein (682aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T660_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80204.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_11
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10164..10973)
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T661_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80205.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_12
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11089..11784
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7J450_9PORP
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_416_curated_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11801..12409
DNA (609bp) protein (203aa)
5-formyltetrahydrofolate cyclO-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T662_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_416_curated_14
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12474..14513)
DNA (2040bp) protein (680aa)
Putative uncharacterized protein id=3542342 bin=GWF2_Bacteroidetes_41_31 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=BJP_08E140C01_Bacteriodales_41_10
SCNpilot_bf_inoc_scaffold_416_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15548..16276)
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T663_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80207.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16338..17312)
DNA (975bp) protein (325aa)
polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
Polyprenyl synthetase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T664_PALPW
Polyprenyl synthetase {ECO:0000313|EMBL:ADQ80208.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17317..18303)
DNA (987bp) protein (329aa)
d-alanine--d-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
D-alanine--D-alanine ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T665_PALPW
SCNpilot_bf_inoc_scaffold_416_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18309..19370)
DNA (1062bp) protein (354aa)
ribosomal large subunit pseudouridine synthase d (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Pseudouridine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T666_PALPW
SCNpilot_bf_inoc_scaffold_416_curated_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19389..20210)
DNA (822bp) protein (274aa)
PASTA domain containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T667_PALPW
pasta domain containing protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_416_curated_20
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(20415..20573)
DNA (159bp) protein (53aa)
50S ribosomal protein L34 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T668_PALPW
LSU ribosomal protein l34p; K02914 large subunit ribosomal protein L34
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_416_curated_21
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(20669..21520)
DNA (852bp) protein (284aa)
id=4573936 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_bf_inoc_scaffold_416_curated_22
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21508..22212)
DNA (705bp) protein (235aa)
Tax=BJP_08E140C01_Bacteriodales_41_10
SCNpilot_bf_inoc_scaffold_416_curated_23
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22209..23183)
DNA (975bp) protein (325aa)
nad-dependent epimerase/dehydratase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219]
NAD-dependent epimerase/dehydratase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T671_PALPW
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADQ80215.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_416_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23672..24607
DNA (936bp) protein (312aa)
quinolinate synthetase a (EC:2.5.1.72); K03517 quinolinate synthase [EC:2.5.1.72]
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Quinolinate synthase A n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T673_PALPW
SCNpilot_bf_inoc_scaffold_416_curated_25
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24621..24935)
DNA (315bp) protein (105aa)
transcriptional regulator n=1 Tax=Pedobacter arcticus RepID=UPI00036B6418
Transcriptional regulator {ECO:0000313|EMBL:KFC18825.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
XRE family transcriptional regulator
SCNpilot_bf_inoc_scaffold_416_curated_26
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24932..25324)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SC33_PELPB
Toxin RelE {ECO:0000313|EMBL:KFC20920.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_416_curated_27
Bacteroides sp. CAG:633, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25907..26251
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:633 RepID=R6FJ32_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB12080.1}; TaxID=1262744 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:633.;"
addiction module antidote protein, HigA family
SCNpilot_bf_inoc_scaffold_416_curated_28
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26299..26616)
DNA (318bp) protein (106aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
transcriptional modulator of maze/toxin, mazf; K07171 mRNA interferase [EC:3.1.-.-]
mRNA interferase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TRL9_MARTH
SCNpilot_bf_inoc_scaffold_416_curated_29
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26613..26858)
DNA (246bp) protein (82aa)
Transcriptional regulator/antitoxin, MazE id=2665789 bin=GWF2_Bacteroidetes_38_335 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
transcriptional regulator/antitoxin MazE; K07172 antitoxin
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_bf_inoc_scaffold_416_curated_30
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26919..27134)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JJW2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE64180.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
Displaying items 1-30 of 48 in total

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