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SCNpilot_bf_inoc_scaffold_1623_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1623_curated_1
GWE1_OD1-i_ACD11_lin_49_15, Moranbacteria, Parcubacteria, Bacteria

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397..1524
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Bacteroides coprosuis DSM 18011 RepID=F3ZTR8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKW06525.1}; TaxID=1618710 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE1_49_15.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_2
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1502..1846
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Bacteroides coprosuis DSM 18011 RepID=F3ZTR7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGJ72301.1}; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_3
unknown

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1824..2423
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1623_curated_4
unknown

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2565..2750
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1623_curated_5
unknown

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3044..3403
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1623_curated_6
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4029..4460
DNA (432bp) protein (144aa)
Uncharacterized protein n=2 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HVK9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59310.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
transposase
SCNpilot_bf_inoc_scaffold_1623_curated_7
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4540..4719
DNA (180bp) protein (60aa)
Uncharacterized protein n=2 Tax=Sphingobacterium RepID=U2J2W3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59309.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
DNA replication protein
SCNpilot_bf_inoc_scaffold_1623_curated_8
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5146..5823
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GWF9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC34683.1}; TaxID=238 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica (Chryseobacterium meningosepticum).;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_9
unknown

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5910..6440
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1623_curated_10
unknown

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comp(7188..7376)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1623_curated_11
Bacteroides coprocola, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7631..8440)
DNA (810bp) protein (270aa)
Fic family protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JFD7_9BACE
Fic family protein {ECO:0000313|EMBL:EDV02310.1}; TaxID=470145 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprocola DSM 17136.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_12
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8857..9891
DNA (1035bp) protein (345aa)
Beta-lactamase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TSW9_MARTH
Beta-lactamase {ECO:0000313|EMBL:KJS04608.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
beta-lactamase
SCNpilot_bf_inoc_scaffold_1623_curated_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10142..10648
DNA (507bp) protein (169aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEK5_CHIPD
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU57827.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_bf_inoc_scaffold_1623_curated_14
Pseudoalteromonas agarivorans, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10653..11321
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas agarivorans S816 RepID=N6VTU8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENN97280.1}; TaxID=1307437 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas agarivorans S816.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_15
Porphyromonas endodontalis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11502..12419)
DNA (918bp) protein (306aa)
Peptidyl-tRNA hydrolase domain protein n=1 Tax=Porphyromonas endodontalis ATCC 35406 RepID=C3JCB9_9PORP
Peptidyl-tRNA hydrolase domain protein {ECO:0000313|EMBL:EEN82164.1}; TaxID=553175 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas endodontalis ATCC 35406.;"
putative peptide chain release factor RF-2; K02836 peptide chain release factor 2
SCNpilot_bf_inoc_scaffold_1623_curated_16
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12675..14483)
DNA (1809bp) protein (603aa)
long-chain-fatty-acid-CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain acyl-CoA synthetase n=2 Tax=Parabacteroides RepID=N2B9G0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB56796.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
SCNpilot_bf_inoc_scaffold_1623_curated_17
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14743..15069
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A6LFK4_PARD8
hypothetical protein; K10947 PadR family transcriptional regulator, regulatory protein PadR
Uncharacterized protein {ECO:0000313|EMBL:ABR44468.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
SCNpilot_bf_inoc_scaffold_1623_curated_18
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15081..16184
DNA (1104bp) protein (368aa)
PspC domain protein n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IX78_9BACE
PspC domain protein {ECO:0000313|EMBL:EEY81653.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_19
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16548..16943)
DNA (396bp) protein (132aa)
Histidine triad (HIT) family protein n=9 Tax=Bacteroidales RepID=A6LFK6_PARD8
histidine triad (HIT) family protein; K02503 Hit-like protein involved in cell-cycle regulation
Uncharacterized protein {ECO:0000313|EMBL:EKN18877.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
SCNpilot_bf_inoc_scaffold_1623_curated_20
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16955..17425)
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=3 Tax=Parabacteroides RepID=K6AQ62_9PORP
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_bf_inoc_scaffold_1623_curated_21
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17614..18771)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B9F3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB46570.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1623_curated_22
Porphyromonas sp. KLE 1280, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19361..19666
DNA (306bp) protein (102aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=997829 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. KLE 1280.;"
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Porphyromonas sp. oral taxon 279 str. F0450 RepID=J6GT23_9PORP
Displaying 22 items

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