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SCNpilot_bf_inoc_scaffold_466_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_466_curated_1
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(97..1728)
DNA (1632bp) protein (544aa)
hydrO-lyase, fe-s type, tartrate/fumarate subfamily, beta subunit; K01676 fumarate hydratase, class I [EC:4.2.1.2]
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5M4_PALPW
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit {ECO:0000313|EMBL:ADQ80018.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_2
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1798..3852)
DNA (2055bp) protein (685aa)
hypothetical protein n=1 Tax=Flavobacterium sp. SCGC AAA160-P02 RepID=UPI000372FD9C
Uncharacterized protein {ECO:0000313|EMBL:KGO84510.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
secreted protein with CotH, lamin and Por secretion system C-terminal sorting domains
SCNpilot_bf_inoc_scaffold_466_curated_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4059..4547
DNA (489bp) protein (163aa)
Arginine repressor n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5P0_PALPW
arginine repressor, argr; K03402 transcriptional regulator of arginine metabolism
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4577..5206
DNA (630bp) protein (210aa)
acetyltransferase n=1 Tax=Anaerophaga thermohalophila RepID=UPI00031DB172
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_466_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5216..6412
DNA (1197bp) protein (399aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5]
Argininosuccinate synthase {ECO:0000313|EMBL:ADQ80036.1}; EC=6.3.4.5 {ECO:0000313|EMBL:ADQ80036.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Argininosuccinate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5P2_PALPW
SCNpilot_bf_inoc_scaffold_466_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6534..7178
DNA (645bp) protein (215aa)
ribonuclease h-related protein; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H-related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5U4_PALPW
Ribonuclease H-related protein {ECO:0000313|EMBL:ADQ80088.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_7
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(7281..8606)
DNA (1326bp) protein (442aa)
glycerate kinase (EC:2.7.1.31); K11529 glycerate 2-kinase [EC:2.7.1.165]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000376D953
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_466_curated_8
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(8607..9377)
DNA (771bp) protein (257aa)
Metal-dependent hydrolase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G355_ECHVK
metal-dependent hydrolase
Metal-dependent hydrolase {ECO:0000313|EMBL:AGA79738.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_bf_inoc_scaffold_466_curated_9
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9639..11057
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JAP6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDE60688.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
dehydrogenase
SCNpilot_bf_inoc_scaffold_466_curated_10
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11057..12325
DNA (1269bp) protein (423aa)
Putative hydrogenase n=1 Tax=Bacteroides sp. CAG:189 RepID=R5JC17_9BACE
Putative hydrogenase {ECO:0000313|EMBL:CCY50229.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
hydrogenase rbh
SCNpilot_bf_inoc_scaffold_466_curated_11
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12322..12555
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Bacteroides faecis RepID=UPI0002630015
Uncharacterized protein {ECO:0000313|EMBL:CDC88349.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_466_curated_12
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12561..13916
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000373356B
Uncharacterized protein {ECO:0000313|EMBL:EGK02047.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
Domain of Unknown Function (DUF1080).
SCNpilot_bf_inoc_scaffold_466_curated_13
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14053..14871
DNA (819bp) protein (273aa)
ApbE family protein n=1 Tax=Bacteroides sp. CAG:189 RepID=R5J7B9_9BACE
ApbE family protein {ECO:0000313|EMBL:CCY50235.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_466_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14987..17326
DNA (2340bp) protein (780aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA topoisomerase i (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T772_PALPW
SCNpilot_bf_inoc_scaffold_466_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17332..18378
DNA (1047bp) protein (349aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T773_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80567.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_16
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18392..19492)
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6F0_PALPW
GTP-binding protein ychf; K06942
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_466_curated_17
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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19659..19985
DNA (327bp) protein (109aa)
phosphonoacetate hydrolase n=1 Tax=Pontibacter roseus RepID=UPI00037F3756
Phosphonoacetate hydrolase {ECO:0000313|EMBL:AKD03506.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
alkylphosphonate utilization operon protein PhnA
SCNpilot_bf_inoc_scaffold_466_curated_18
Bacillus halodurans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20061..21629)
DNA (1569bp) protein (523aa)
BH1004 protein n=1 Tax=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) RepID=Q9KE54_BACHD
hypothetical protein; K09686 antibiotic transport system permease protein rbh
BH1004 protein {ECO:0000313|EMBL:BAB04723.1}; TaxID=272558 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM; 9153 / C-125).;"
SCNpilot_bf_inoc_scaffold_466_curated_19
Oceanobacillus picturae, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(21635..22345)
DNA (711bp) protein (237aa)
ABC transporter ATP-binding protein n=1 Tax=Virgibacillus halodenitrificans RepID=UPI0002E9FC50
Putative ABC transporter ATP-binding protein YbhF {ECO:0000313|EMBL:CDO03899.1}; TaxID=171693 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus picturae.;"
ABC transporter; K09687 antibiotic transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_466_curated_20
Prevotella bryantii, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22839..23882
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Prevotella bryantii B14 RepID=D8DYA4_PREBR
Uncharacterized protein {ECO:0000313|EMBL:EFI71582.1}; TaxID=752555 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bryantii B14.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_466_curated_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23933..24481
DNA (549bp) protein (183aa)
Transcriptional regulator n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T605_PALPW
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ADQ80149.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_22
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24525..26177
DNA (1653bp) protein (551aa)
amp-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
AMP-dependent synthetase and ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T604_PALPW
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADQ80148.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_23
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26194..27909)
DNA (1716bp) protein (572aa)
exonuclease recj (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Exonuclease RecJ {ECO:0000313|EMBL:ADQ80485.1}; EC=3.1.-.- {ECO:0000313|EMBL:ADQ80485.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Exonuclease RecJ n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z1_PALPW
SCNpilot_bf_inoc_scaffold_466_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28059..29468
DNA (1410bp) protein (470aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Y9_PALPW
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:ADQ80483.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_25
Tannerella sp. CAG:51, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29486..29956
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Porphyromonadaceae RepID=R7DIN9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD90071.1}; TaxID=1262979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:51.;"
regulatory protein RecX; K03565 regulatory protein
SCNpilot_bf_inoc_scaffold_466_curated_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29966..30847)
DNA (882bp) protein (294aa)
GTPase Era n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T173_PALPW
GTP-binding protein era; K03595 GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_27
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31003..32169
DNA (1167bp) protein (389aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T172_PALPW
integral membrane sensor signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_466_curated_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32311..32892
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T171_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78452.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_466_curated_29
Bacteroides sp. CAG:927, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


32908..33093
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=1 Tax=Bacteroides sp. CAG:927 RepID=R5B873_9BACE
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262753 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:927.;"
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_bf_inoc_scaffold_466_curated_30
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33095..34084
DNA (990bp) protein (330aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T169_PALPW
Tax=CG_Paludi_01
Displaying items 1-30 of 32 in total

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