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SCNpilot_bf_inoc_scaffold_908_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_908_curated_1
unknown

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comp(3..362)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_908_curated_2
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(521..895)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Capnocytophaga cynodegmi RepID=UPI00037FBEA3
Putative DNA-binding protein, histone-like {ECO:0000313|EMBL:CEN54570.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
DNA-binding protein, histone-like, putative
SCNpilot_bf_inoc_scaffold_908_curated_3
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1457..2650)
DNA (1194bp) protein (398aa)
ATPase n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DUM6_9BACT
ATPase {ECO:0000313|EMBL:EOZ95801.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
hypothetical protein; K07133
SCNpilot_bf_inoc_scaffold_908_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2874..3074)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R3_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79007.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_908_curated_5
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3071..3745)
DNA (675bp) protein (225aa)
ABC transporter related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R4_PALPW
ABC transporter; K09812 cell division transport system ATP-binding protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_908_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3759..4352)
DNA (594bp) protein (198aa)
phosphoribosyL-amp cyclohydrolase; phosphoribosyL-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31); K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19]
Histidine biosynthesis bifunctional protein HisIE n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R5_PALPW
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_908_curated_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4407..5444)
DNA (1038bp) protein (346aa)
aspartate-ammonia ligase (EC:6.3.1.1); K01914 aspartate--ammonia ligase [EC:6.3.1.1]
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aspartate--ammonia ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R6_PALPW
SCNpilot_bf_inoc_scaffold_908_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5654..6256)
DNA (603bp) protein (201aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Dihydrofolate reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R7_PALPW
SCNpilot_bf_inoc_scaffold_908_curated_9
Bacteroides eggerthii CAG:109, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6306..7100)
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1263043 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides eggerthii CAG:109.;"
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=2 Tax=Bacteroides RepID=E5WYF5_9BACE
SCNpilot_bf_inoc_scaffold_908_curated_10
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7373..9358)
DNA (1986bp) protein (662aa)
OmpA/MotB domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R9_PALPW
ompa/motb domain protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_908_curated_11
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9373..10620)
DNA (1248bp) protein (416aa)
Uncharacterized conserved protein UCP033563 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2S0_PALPW
hypothetical protein
Uncharacterized conserved protein UCP033563 {ECO:0000313|EMBL:ADQ79014.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_908_curated_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10698..11141)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0A1_PALPW
LSU ribosomal protein l9p; K02939 large subunit ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_908_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11162..11431)
DNA (270bp) protein (90aa)
30S ribosomal protein S18 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0A2_PALPW
SSU ribosomal protein s18p; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_908_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11435..11782)
DNA (348bp) protein (116aa)
30S ribosomal protein S6 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0A3_PALPW
SSU ribosomal protein s6p; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_908_curated_15
RBG_13_Bacteroidetes_44_24_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(11858..12295)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YD45_9SPHI
Tax=RBG_13_Bacteroidetes_44_24_curated
SCNpilot_bf_inoc_scaffold_908_curated_16
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(12305..13078)
DNA (774bp) protein (258aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1XLE2_9BACT
exporters of the RND superfamily-like protein
Tax=BJP_IG2069_Bacteroidetes_43_11
SCNpilot_bf_inoc_scaffold_908_curated_17
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

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comp(13109..15382)
DNA (2274bp) protein (758aa)
Exporter of the RND superfamily protein id=4525143 bin=GWF2_Bacteroidetes_40_14 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
exporter of the RND superfamily protein; K07003
Tax=BJP_IG2069_Bacteroidetes_43_11
SCNpilot_bf_inoc_scaffold_908_curated_18

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comp(15565..16977)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Y1E2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD31257.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_908_curated_19
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(17092..18183)
DNA (1092bp) protein (364aa)
AraC family transcriptional regulator id=4525148 bin=GWF2_Bacteroidetes_40_14 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
transcriptional regulator, AraC family
Tax=GWF2_Bacteroidetes_40_14_curated
SCNpilot_bf_inoc_scaffold_908_curated_20
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18422..20437
DNA (2016bp) protein (672aa)
CoA-disulfide reductase {ECO:0000313|EMBL:CEA15681.1}; EC=1.8.1.14 {ECO:0000313|EMBL:CEA15681.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
NAD(FAD)-dependent dehydrogenase id=4414378 bin=GWF2_Bacteroidetes_40_14 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
NAD(FAD)-dependent dehydrogenase
Displaying 20 items

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