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SCNpilot_bf_inoc_scaffold_4307_curated

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_4307_curated_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3..869
DNA (867bp) protein (289aa)
Na(+)-translocating NADH-quinone reductase subunit A {ECO:0000256|HAMAP-Rule:MF_00425, ECO:0000256|SAAS:SAAS00017509}; Short=Na(+)-NQR subunit A {ECO:0000256|HAMAP-Rule:MF_00425};; Short=Na(+)-translocating NQR subunit A {ECO:0000256|HAMAP-Rule:MF_00425};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00425, ECO:0000256|SAAS:SAAS00179150};; NQR complex subunit A {ECO:0000256|HAMAP-Rule:MF_00425}; NQR-1 subunit A {ECO:0000256|HAMAP-Rule:MF_00425}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroid
Na(+)-translocating NADH-quinone reductase subunit A; K00346 Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:1.6.5.-]
Na(+)-translocating NADH-quinone reductase subunit A n=3 Tax=Parabacteroides RepID=A7AEG2_9PORP
SCNpilot_bf_inoc_scaffold_4307_curated_2
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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891..2084
DNA (1194bp) protein (398aa)
Na(+)-translocating NADH-quinone reductase subunit B {ECO:0000256|HAMAP-Rule:MF_00426}; Short=Na(+)-NQR subunit B {ECO:0000256|HAMAP-Rule:MF_00426};; Short=Na(+)-translocating NQR subunit B {ECO:0000256|HAMAP-Rule:MF_00426};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00426};; NQR complex subunit B {ECO:0000256|HAMAP-Rule:MF_00426}; NQR-1 subunit B {ECO:0000256|HAMAP-Rule:MF_00426}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabact
Na(+)-translocating NADH-quinone reductase subunit B; K00347 Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:1.6.5.-]
NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit n=3 Tax=Parabacteroides RepID=K5ZIB4_9PORP
SCNpilot_bf_inoc_scaffold_4307_curated_3
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2105..2794
DNA (690bp) protein (230aa)
Na(+)-translocating NADH-quinone reductase subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; Short=Na(+)-NQR subunit C {ECO:0000256|HAMAP-Rule:MF_00427};; Short=Na(+)-translocating NQR subunit C {ECO:0000256|HAMAP-Rule:MF_00427};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00427};; NQR complex subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; NQR-1 subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabact
Na(+)-translocating NADH-quinone reductase subunit C; K00348 Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:1.6.5.-]
NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IR28_9BACE
SCNpilot_bf_inoc_scaffold_4307_curated_4
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2799..3428
DNA (630bp) protein (210aa)
Na(+)-translocating NADH-quinone reductase subunit D {ECO:0000256|HAMAP-Rule:MF_00428, ECO:0000256|SAAS:SAAS00170009}; Short=Na(+)-NQR subunit D {ECO:0000256|HAMAP-Rule:MF_00428};; Short=Na(+)-translocating NQR subunit D {ECO:0000256|HAMAP-Rule:MF_00428};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00428, ECO:0000256|SAAS:SAAS00179330};; NQR complex subunit D {ECO:0000256|HAMAP-Rule:MF_00428}; NQR-1 subunit D {ECO:0000256|HAMAP-Rule:MF_00428}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroi
Na(+)-translocating NADH-quinone reductase subunit D; K00349 Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:1.6.5.-]
NADH:ubiquinone oxidoreductase, D subunit n=4 Tax=Parabacteroides RepID=A7AEF9_9PORP
SCNpilot_bf_inoc_scaffold_4307_curated_5
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3453..4070
DNA (618bp) protein (206aa)
nqrE; NADH:ubiquinone oxidoreductase, E subunit; K00350 Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:1.6.5.-]
Na(+)-translocating NADH-quinone reductase subunit E {ECO:0000256|HAMAP-Rule:MF_00429, ECO:0000256|SAAS:SAAS00170325}; Short=Na(+)-NQR subunit E {ECO:0000256|HAMAP-Rule:MF_00429};; Short=Na(+)-translocating NQR subunit E {ECO:0000256|HAMAP-Rule:MF_00429};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00429, ECO:0000256|SAAS:SAAS00179335};; NQR complex subunit E {ECO:0000256|HAMAP-Rule:MF_00429}; NQR-1 subunit E {ECO:0000256|HAMAP-Rule:MF_00429}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroid
NADH:ubiquinone oxidoreductase, E subunit n=3 Tax=Parabacteroides RepID=B7BBB7_9PORP
SCNpilot_bf_inoc_scaffold_4307_curated_6
Porphyromonas cangingivalis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4100..5359
DNA (1260bp) protein (420aa)
Na(+)-translocating NADH-quinone reductase subunit F; K00351 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]
Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Porphyromonas gulae RepID=UPI0003616933
Na(+)-translocating NADH-quinone reductase subunit F {ECO:0000313|EMBL:KGN83028.1}; TaxID=36874 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas cangingivalis.;"
SCNpilot_bf_inoc_scaffold_4307_curated_7
Odoribacter sp. CAG:788, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6073..7251)
DNA (1179bp) protein (393aa)
transglutaminase n=1 Tax=Marinilabilia salmonicolor RepID=UPI000299F305
Uncharacterized protein {ECO:0000313|EMBL:CCZ06396.1}; TaxID=1262909 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter sp. CAG:788.;"
transglutaminase domain-containing protein
SCNpilot_bf_inoc_scaffold_4307_curated_8
unknown

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7402..7584
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_4307_curated_9
unknown

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comp(7576..7689)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_4307_curated_10
Bacteroides sp. CAG:714, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7719..9221
DNA (1503bp) protein (501aa)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; TaxID=1262749 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:714.;"
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:714 RepID=R6YMC8_9BACE
glycoside hydrolase family protein
Displaying 10 items

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