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SCNpilot_bf_inoc_scaffold_504_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_504_curated_1
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2..2065
DNA (2064bp) protein (688aa)
membrane protein n=1 Tax=Alistipes senegalensis RepID=UPI00030DEEC5
hypothetical protein
TonB-linked outer membrane , SusC/RagA family protein {ECO:0000313|EMBL:EXY39478.1}; TaxID=1339308 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 3774 T13.;"
SCNpilot_bf_inoc_scaffold_504_curated_2
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2118..4010
DNA (1893bp) protein (631aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037A1324
Uncharacterized protein {ECO:0000313|EMBL:EOR95924.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_504_curated_3
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4072..5217
DNA (1146bp) protein (382aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=31954 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. pseudolongum.;"
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003600481
Glycosidases
SCNpilot_bf_inoc_scaffold_504_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5943..8276
DNA (2334bp) protein (778aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
ATP-dependent DNA helicase pcra (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
ATP-dependent DNA helicase PcrA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0X8_PALPW
SCNpilot_bf_inoc_scaffold_504_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8293..9042)
DNA (750bp) protein (250aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3W1_PALPW
uba/thif-type nad/fad binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:ADQ79405.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_6
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

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9497..10954
DNA (1458bp) protein (486aa)
Secreted protein containing PKD domains id=4249116 bin=GWF2_Bacteroidetes_29_10 species=uncultured Flavobacteriia bacterium genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
hypothetical protein
Tax=GWE2_Bacteroidetes_29_8_curated
SCNpilot_bf_inoc_scaffold_504_curated_7
Bacteroides sp. CAG:754, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11161..12090)
DNA (930bp) protein (310aa)
YegS/BmrU family lipid kinase n=1 Tax=Bacteroides sp. CAG:754 RepID=R6E4L6_9BACE
YegS/BmrU family lipid kinase {ECO:0000313|EMBL:CDA85147.1}; TaxID=1262750 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:754.;"
hypothetical protein; K07029
SCNpilot_bf_inoc_scaffold_504_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12087..13160)
DNA (1074bp) protein (358aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Chorismate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8R9_PALPW
SCNpilot_bf_inoc_scaffold_504_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13207..13794)
DNA (588bp) protein (196aa)
peptidylprolyl isomerase fkbp-type; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8S0_PALPW
SCNpilot_bf_inoc_scaffold_504_curated_10
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13935..16613)
DNA (2679bp) protein (893aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8S1_PALPW
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_504_curated_11
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16784..17986
DNA (1203bp) protein (401aa)
N-acetylmuramoyL-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ADQ81181.1}; EC=3.5.1.28 {ECO:0000313|EMBL:ADQ81181.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8S2_PALPW
SCNpilot_bf_inoc_scaffold_504_curated_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17999..18910
DNA (912bp) protein (304aa)
Mammalian cell entry related domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8S3_PALPW
mammalian cell entry related domain protein
Mammalian cell entry related domain protein {ECO:0000313|EMBL:ADQ81182.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19204..20706
DNA (1503bp) protein (501aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0A9_PALPW
chromosomal replication initiator protein dnaa; K02313 chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20813..21367
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0B0_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78164.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21479..22315
DNA (837bp) protein (279aa)
tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
tRNA dimethylallyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0B1_PALPW
SCNpilot_bf_inoc_scaffold_504_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22300..23211
DNA (912bp) protein (304aa)
RNAse z (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11]
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Ribonuclease Z n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T178_PALPW
SCNpilot_bf_inoc_scaffold_504_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23215..24837)
DNA (1623bp) protein (541aa)
c-terminal processing peptidase-3; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
C-terminal processing peptidase-3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8M8_PALPW
C-terminal processing peptidase-3 {ECO:0000313|EMBL:ADQ81137.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24879..25298)
DNA (420bp) protein (140aa)
cmp/dcmp deaminase zinc-binding protein; K01493 dCMP deaminase [EC:3.5.4.12]
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8M7_PALPW
CMP/dCMP deaminase zinc-binding protein {ECO:0000313|EMBL:ADQ81136.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_19
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25325..26692)
DNA (1368bp) protein (456aa)
mur ligase middle domain protein; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]
Mur ligase middle domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8M6_PALPW
Mur ligase middle domain protein {ECO:0000313|EMBL:ADQ81135.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26771..27607
DNA (837bp) protein (279aa)
Putative metal-dependent hydrolase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8M5_PALPW
metaL-dependent hydrolase
Putative metal-dependent hydrolase {ECO:0000313|EMBL:ADQ81134.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_21
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27703..28185
DNA (483bp) protein (161aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255CF34
CDP-alcohol phosphatidyltransferase
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_504_curated_22
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28297..28590)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:927 RepID=R5B1Q7_9BACE
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_504_curated_23
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28602..29735)
DNA (1134bp) protein (378aa)
Putative lipoprotein id=4483560 bin=GWC2_Bacteroidetes_46_850 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
putative lipoprotein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_504_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30170..31579
DNA (1410bp) protein (470aa)
exonuclease v subunit alpha; K01144 exodeoxyribonuclease V [EC:3.1.11.5]
Exonuclease V subunit alpha n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2Q0_PALPW
Exonuclease V subunit alpha {ECO:0000313|EMBL:ADQ78994.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_504_curated_25
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31628..33853
DNA (2226bp) protein (742aa)
OmpA domain protein n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JEY1_9BACT
ompa/motb domain protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_504_curated_26
Leeuwenhoekiella blandensis, Leeuwenhoekiella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

34230..34679
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI000373918A
Uncharacterized protein {ECO:0000313|EMBL:EAQ49620.1}; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
SCNpilot_bf_inoc_scaffold_504_curated_27
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

34657..35076
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W172_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ13502.1}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PCC 9333.;"
SCNpilot_bf_inoc_scaffold_504_curated_28
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35717..35971
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000373DCFD
hypothetical protein; K07746 hypothetical protein
Tax=GWF2_Bacteroidetes_40_14_curated
SCNpilot_bf_inoc_scaffold_504_curated_29
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

35961..36260
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000379DD18
Plasmid stabilization protein {ECO:0000313|EMBL:KIA89703.1}; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium jeonii.;"
plasmid stabilization protein
SCNpilot_bf_inoc_scaffold_504_curated_30
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36496..37104
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Prevotella disiens FB035-09AN RepID=E1KTA6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGN76433.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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