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SCNpilot_bf_inoc_scaffold_114_curated

Search features with annotation key words

Displaying items 31-60 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_114_curated_31
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40331..41845)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GNE1_9SPHI
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_32
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41995..43005
DNA (1011bp) protein (337aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T690_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_33
Bacteroides sp. CAG:144, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43020..43472
DNA (453bp) protein (151aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1262736 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:144.;"
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-]
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Bacteroides sp. CAG:144 RepID=R5Y2B6_9BACE
SCNpilot_bf_inoc_scaffold_114_curated_34
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43473..44147
DNA (675bp) protein (225aa)
cdp-diacylglycerol/serineO-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol/serineO-phosphatidyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5T0_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_35
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44148..45173)
DNA (1026bp) protein (342aa)
thiamine-phosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Thiamine-monophosphate kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6K9_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_36
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45173..45622)
DNA (450bp) protein (150aa)
ribose-5-phosphate isomerase (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose-5-phosphate isomerase {ECO:0000313|EMBL:ADQ80354.1}; EC=5.3.1.6 {ECO:0000313|EMBL:ADQ80354.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Ribose-5-phosphate isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6L0_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_37
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45685..46836)
DNA (1152bp) protein (384aa)
Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6F5_PALPW
two component, sigma54 specific, transcriptional regulator, fis family
Putative two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADQ80299.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_38
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(46858..48150)
DNA (1293bp) protein (431aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6F6_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_39
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48227..48736)
DNA (510bp) protein (170aa)
Transcriptional regulator, AraC family n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=E2ND90_9BACE
Transcriptional regulator, AraC family {ECO:0000313|EMBL:GAO28324.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_114_curated_40
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(49075..50415)
DNA (1341bp) protein (447aa)
FeS assembly protein SufD n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5H8_PALPW
fes assembly protein sufd; K09015 Fe-S cluster assembly protein SufD
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_41
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(50431..51183)
DNA (753bp) protein (251aa)
FeS assembly ATPase SufC n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5H7_PALPW
fes assembly ATPase sufc; K09013 Fe-S cluster assembly ATP-binding protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_42
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(51224..52660)
DNA (1437bp) protein (479aa)
Iron-regulated ABC transporter membrane component SufB n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5H6_PALPW
iroN-regulated ABC transporter membrane component sufb; K09014 Fe-S cluster assembly protein SufB
Iron-regulated ABC transporter membrane component SufB {ECO:0000313|EMBL:ADQ79970.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_43
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(52833..53765)
DNA (933bp) protein (311aa)
methionine synthase (EC:2.1.1.13)
Methionine synthase {ECO:0000313|EMBL:ADQ80121.1}; EC=2.1.1.13 {ECO:0000313|EMBL:ADQ80121.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Methionine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5X7_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_44
Chlorobaculum parvum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(53795..54604)
DNA (810bp) protein (270aa)
Zinc transporter ZupT n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=ZUPT_CHLP8 rbh
zinc transporter ZupT; K07238 zinc transporter, ZIP family
Zinc transporter ZupT {ECO:0000255|HAMAP-Rule:MF_00548}; TaxID=517417 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp.; thiosulfatophilum (strain DSM 263 / NCIB 8327)).;"
SCNpilot_bf_inoc_scaffold_114_curated_45
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54732..56180)
DNA (1449bp) protein (483aa)
tryptophanase (EC:4.1.99.1); K01667 tryptophanase [EC:4.1.99.1]
Tryptophanase {ECO:0000313|EMBL:ADQ79967.1}; EC=4.1.99.1 {ECO:0000313|EMBL:ADQ79967.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Tryptophanase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5H3_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_46
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(56284..57720)
DNA (1437bp) protein (479aa)
d-alanyL-d-alaninecarboxypeptidase/d-alanyL-d-alanine-endopeptidase (EC:3.4.16.4); K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:ADQ79806.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ADQ79806.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T512_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_47
unknown

Not on your lists

comp(58064..58543)
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_114_curated_48
unknown

Not on your lists

comp(58546..59910)
DNA (1365bp) protein (455aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_114_curated_49
Porphyromonadaceae bacterium COT-184 OH4590, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(59932..60336)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6) RepID=F9ZB64_ODOSD
Uncharacterized protein {ECO:0000313|EMBL:KGN82158.1}; TaxID=1517682 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium COT-184 OH4590.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_114_curated_50
unknown

Not on your lists

comp(60333..60431)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_114_curated_51
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(60917..63055)
DNA (2139bp) protein (713aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T510_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_52
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

63436..64143
DNA (708bp) protein (236aa)
peroxiredoxin; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Uncharacterized protein n=2 Tax=Tannerella RepID=R7DEJ2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB45046.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
SCNpilot_bf_inoc_scaffold_114_curated_53
unknown

Not on your lists

64296..64571
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_114_curated_54
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

64767..66461
DNA (1695bp) protein (565aa)
NAD(FAD)-dependent dehydrogenase id=1873705 bin=GWE2_Bacteroidetes_42_39 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_114_curated_55
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

66499..66915
DNA (417bp) protein (139aa)
hypothetical protein AnHS1_14000 id=1873724 bin=GWE2_Bacteroidetes_42_39 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_56
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

66912..67739
DNA (828bp) protein (276aa)
Metallo-beta-lactamase family protein n=1 Tax=Prevotella sp. CAG:604 RepID=R6BB74_9BACT
metallo-beta-lactamase family protein; K06897
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_57
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

67835..68560
DNA (726bp) protein (242aa)
Sugar transferase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E5I0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJF43891.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
SCNpilot_bf_inoc_scaffold_114_curated_58
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(68538..69296)
DNA (759bp) protein (253aa)
Acyl-ACP thioesterase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0E2_PALPW
acyL-acp thioesterase
Acyl-ACP thioesterase {ECO:0000313|EMBL:ADQ78301.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_59
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(69324..70349)
DNA (1026bp) protein (342aa)
aldose 1-epimerase (EC:5.1.3.3); K01785 aldose 1-epimerase [EC:5.1.3.3]
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aldose 1-epimerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6D0_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_60
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(70464..71624)
DNA (1161bp) protein (387aa)
galactokinase (EC:2.7.1.6); K00849 galactokinase [EC:2.7.1.6]
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Galactokinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6D1_PALPW
Displaying items 31-60 of 113 in total

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