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SCNpilot_bf_inoc_scaffold_114_curated

Search features with annotation key words

Displaying items 91-113 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_114_curated_91
unknown

Not on your lists

103520..103612
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_114_curated_92
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(103594..104247)
DNA (654bp) protein (218aa)
uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
Uracil phosphoribosyltransferase {ECO:0000313|EMBL:ADQ80188.1}; EC=2.4.2.9 {ECO:0000313|EMBL:ADQ80188.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Uracil phosphoribosyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T644_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_93
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(104251..105051)
DNA (801bp) protein (267aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T606_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_94
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(105107..107518)
DNA (2412bp) protein (804aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T607_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80151.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_95
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(107494..108384)
DNA (891bp) protein (297aa)
Tyrosine recombinase XerC n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T608_PALPW
tyrosine recombinase xerd subunit; K04763 integrase/recombinase XerD
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_96
unknown

Not on your lists

comp(108435..108554)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_114_curated_97
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(108579..109643)
DNA (1065bp) protein (355aa)
DNA-binding helix-turn-helix protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FW34_9SPHI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEI92814.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_114_curated_98
Prevotella sp. CAG:755, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

110183..111130
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:755 RepID=R5GFY6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCY16335.1}; TaxID=1262935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:755.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_bf_inoc_scaffold_114_curated_99
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

111142..113316
DNA (2175bp) protein (725aa)
Sodium/hydrogen exchanger n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6K7_PALPW
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ADQ80351.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_100
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(113373..115169)
DNA (1797bp) protein (599aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5C2_PALPW
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_101
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(115182..116540)
DNA (1359bp) protein (453aa)
ppic-type peptidyL-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5C3_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_102
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(116577..117437)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5M7_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80021.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_103
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(117456..119324)
DNA (1869bp) protein (623aa)
ppic-type peptidyL-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5M8_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_104
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(119512..120987)
DNA (1476bp) protein (492aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5M9_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_105
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(121155..123533)
DNA (2379bp) protein (793aa)
Putative zinc-carboxypeptidase D (Metallocarboxypeptidase D) (Cbp module) putative carbohydrate binding domain putative signal peptide n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VJI3_CLOAI
beta-helix fold protein
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_bf_inoc_scaffold_114_curated_106
Odoribacter laneus CAG:561, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(123801..124499)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Odoribacter laneus CAG:561 RepID=R5URR3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCZ80755.1}; TaxID=1263089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter laneus CAG:561.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_114_curated_107
Bacteroides nordii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(124502..127495)
DNA (2994bp) protein (998aa)
Uncharacterized protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I8XRD7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY52637.1}; TaxID=997884 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides nordii CL02T12C05.;"
type I restriction-modification system methyltransferase subunit
SCNpilot_bf_inoc_scaffold_114_curated_108
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(127569..129812)
DNA (2244bp) protein (748aa)
(p)ppgpp synthetase i, spot/rela (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ADQ80024.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ADQ80024.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5N0_PALPW
SCNpilot_bf_inoc_scaffold_114_curated_109
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(129835..131037)
DNA (1203bp) protein (401aa)
alanine dehydrogenase/pnt domain protein; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase/PNT domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5N2_PALPW
Alanine dehydrogenase/PNT domain protein {ECO:0000313|EMBL:ADQ80026.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_114_curated_110
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(131492..132697)
DNA (1206bp) protein (402aa)
Ig-like domain-containing surface protein n=1 Tax=Prevotella sp. CAG:873 RepID=R7J0T7_9BACT
Flavobacterium repeat protein {ECO:0000313|EMBL:AIJ36681.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_114_curated_111
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(132770..133270)
DNA (501bp) protein (167aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1J2_PALPW
RNA polymerase, sigma-24 subunit, ecf subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_114_curated_112
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(133373..134590)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00030DB8EC
AraC family transcriptional regulator
Tax=GWF2_Bacteroidetes_41_31_curated
SCNpilot_bf_inoc_scaffold_114_curated_113
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(135055..136896)
DNA (1842bp) protein (614aa)
Type III restriction protein res subunit n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IZA6_CYCMS
Restriction endonuclease subunit R {ECO:0000313|EMBL:KFC18294.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
type III restriction protein res subunit
Displaying items 91-113 of 113 in total

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